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AT2G43550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.957
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Scorpion toxin-like knottin superfamily protein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: Scorpion toxin-like knottin superfamily protein (TAIR:AT2G43535.1); Has 147 Blast hits to 147 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUC4eggNOG:ENOG411070MEMBL:AC002335EMBL:AJ632250EMBL:AJ632251EMBL:AJ632252EMBL:AJ632253
EMBL:AJ632254EMBL:AJ632255EMBL:AJ632256EMBL:AJ632257EMBL:AJ632258EMBL:AJ632259EMBL:AJ632260
EMBL:AJ632261EMBL:AJ632262EMBL:AJ632263EMBL:AJ632264EMBL:AJ632265EMBL:AJ632266EMBL:AK118750
EMBL:CP002685EnsemblPlants:AT2G43550EnsemblPlants:AT2G43550.1entrez:818957Gene3D:3.30.30.10GeneID:818957Genevisible:O22869
GO:GO:0005576GO:GO:0008200GO:GO:0031640GO:GO:0050832Gramene:AT2G43550.1HOGENOM:HOG000090027InParanoid:O22869
InterPro:IPR002061InterPro:IPR003614KEGG:ath:AT2G43550PaxDb:O22869Pfam:O22869Pfam:PF00537PhylomeDB:O22869
PIR:E84867PRIDE:O22869PRO:PR:O22869ProteinModelPortal:O22869Proteomes:UP000006548RefSeq:NP_566002.1SMART:SM00505
STRING:3702.AT2G43550.1SUPFAM:SSF57095TAIR:AT2G43550TMHMM:TMhelixUniGene:At.24392UniGene:At.48587UniProt:O22869
Coordinates (TAIR10) chr2:+:18073263..18073651
Molecular Weight (calculated) 11872.70 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.17
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEYISKVSN KQRKMKFVSV FLVLFIFFLV VLEAPEKIEA KDDKFICVVE YGGDVGPTFC NPKFFPTLCR QNCRSFKGAK GGKCVKQPKH KHIKCFCDYC
101: KDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)