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AT2G43500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant regulator RWP-RK family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT3G59580.2); Has 665 Blast hits to 521 proteins in 81 species: Archae - 0; Bacteria - 147; Metazoa - 3; Fungi - 2; Plants - 476; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKM4eggNOG:ENOG410YA7WEMBL:AC002335EMBL:AY102562EMBL:AY102563EMBL:AY649251EMBL:CP002685
EnsemblPlants:AT2G43500EnsemblPlants:AT2G43500.1EnsemblPlants:AT2G43500.2entrez:818951GeneID:818951Genevisible:O22864GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355hmmpanther:PTHR32002hmmpanther:PTHR32002:SF7HOGENOM:HOG000237689
InParanoid:O22864InterPro:IPR000270InterPro:IPR003035KEGG:ath:AT2G43500OMA:KEYHINEPaxDb:O22864Pfam:O22864
Pfam:PF00564Pfam:PF02042Pfscan:PS51519Pfscan:PS51745PhylomeDB:O22864PIR:H84866PRIDE:O22864
PRO:PR:O22864PROSITE:PS51519PROSITE:PS51745ProteinModelPortal:O22864Proteomes:UP000006548RefSeq:NP_001154573.1RefSeq:NP_181878.1
SMART:SM00666SMR:O22864SUPFAM:SSF54277TAIR:AT2G43500UniGene:At.50134UniProt:O22864
Coordinates (TAIR10) chr2:+:18062715..18066450
Molecular Weight (calculated) 104889.00 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.43
Length 947 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPFASREK GFGNYSDFPT EQMDGLSSNF GSGVRNLISD DMFNPSSELM NFDSLAAWCN SPSATDILFA QYGLSNSQPM PFGAFTSFHV ADPKATSLTR
101: SFYDLESSYY GEERSSAQEM NSQFHRSSDS DELSGKRRKV VNQKIGFPNV LNCTIPRSLS HSLDEKMLKA LSLFMESSGS GEGILAQVWT PIKTGDQYLL
201: STCDQAYLLD PRFSQYREVS RRFTFAAEAN QCSFPGLPGR VFISGVPEWT SNVMYYKTDE YLRMKHAIDN EVRGSIAIPI LEASGTSCCA VMELVTSKEK
301: PNFDMEMDSV CRALQAVNLR TAAIPRPQYL SSSQRDALAE IQDVLRTVCH AHKLPLALAW IPCRKDQSIR VSGQKSGENC ILCIEETACY VNDMEMEGFV
401: HACLEHCLRE KEGIVGKAFI SNQPFFSSDV KAYDISEYPI VQHARKYGLN AAVAIKLRST YTGEDDYILE LFLPVSMKGS LEQQLLLDSL SGTMQRICRT
501: LRTVSEVGST KKEGTKPGFR SSDMSNFPQT TSSENFQTIS LDSEFNSTRS MFSGMSSDKE NSITVSQGTL EQDVSKARTP EKKKSTTEKN VSLSALQQHF
601: SGSLKDAAKS LGGETSAYFQ AWVYFFCPTT LKRICRQHGI MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDSATGE FIAVRPFIQE IDTQKGLSSL
701: DNDAHARRSQ EDMPDDTSFK LQEAKSVDNA IKLEEDTTMN QARPGSFMEV NASGQPWAWM AKESGLNGSE GIKSVCNLSS VEISDGMDPT IRCSGSIVEP
801: NQSMSCSISD SSNGSGAVLR GSSSTSMEDW NQMRTHNSNS SESGSTTLIV KASYREDTVR FKFEPSVGCP QLYKEVGKRF KLQDGSFQLK YLDDEEEWVM
901: LVTDSDLQEC LEILHGMGKH SVKFLVRDLS APLGSSGGSN GYLGTGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)