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AT2G43410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNA binding
Curator
Summary (TAIR10)
FPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.
Computational
Description (TAIR10)
FPA; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 18609 Blast hits to 15572 proteins in 650 species: Archae - 12; Bacteria - 876; Metazoa - 10127; Fungi - 2512; Plants - 3298; Viruses - 9; Other Eukaryotes - 1775 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT2G43410EnsemblPlants:AT2G43410.1entrez:818942hmmpanther:PTHR23189hmmpanther:PTHR23189:SF45Pfam:PF00076Pfam:PF07744
Pfam:PF13893Pfscan:PS50102tair10-symbols:FPA
Coordinates (TAIR10) chr2:-:18026397..18030989
Molecular Weight (calculated) 94907.00 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.70
Length 858 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSMKPFRA DDSGFQSNNL WVGSLTPETT ESDLTELFGR YGDIDRITVY SSRGFAFIYY RHVEEAVAAK EALQGANLNG SQIKIEYARP AKPCKSLWVG
101: GIGPNVSKDD LEEEFSKFGK IEDFRFLRER KTAFIDYYEM DDALQAKSMN GKPMGGSFLR VDFLRSQAPK KEQWAGSYDN RNGNMNHKPQ YPHSYEDFKG
201: DVQPSKVLWI GFPPTATQCN DEQILHNAMI LFGEIERVKS YPSRNFALVE FRSAEEARQC KEGLQGRLFN NPRIKIMYSN DELPPEQDDT SFYSEYNDVV
301: GKEPNWRRPS ANGTGILPSP TGPGILPSPA QGTRRPMRSN PDSWEGYDPA QLVRESKRTR RDGSVDGFTP MGVDERSFGR GSVAARPIRG PPDSDHIWRG
401: MIAKGGTPVC CARCVPMGKG IETKLPEVVN CSARTDLNML AKHYAVAIGC EIVFFVPDRE EDFASYTEFL RYLSSKDRAG VAKLDDGTTL FLVPPSDFLT
501: DVLQVTRQER LYGVVLKLPP PAVPVTASYR QESQSNPLHY MDQARDSPAN ASHSLYPPRE NYIRGAPEHL TAASKPSVSE PLRIPNNAAP QAGVSLTPEL
601: LATLASILPA TSQPAAPESH QPMSGPSTVV STAHQSNGLY NGEAPSQAWK RGPQTVHDAS NQSFQQYGNQ YTPAGQLPPP PSRYPPASNN PNYTSGMVHG
701: NMQYQSQSVN MPQLSPLPNM PHNNYSMYTQ GSSNHPVSQP MVQQYQPEAS MPNQNYGPIP SYQQANFHGV TTNQAQNLNP SQFQAAMQPP ADKANLEPQN
801: QALRLQPMIS GDGQGTTDGE VDKNQRYQST LQFAANLLLQ IQQKQQQQSS GTPAGQGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)