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AT2G43370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U1 small nuclear ribonucleoprotein-70K (TAIR:AT3G50670.1); Has 272 Blast hits to 272 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:4275eggNOG:COG0724eggNOG:KOG0113EMBL:AC002335EMBL:AK118423EMBL:AY072388EMBL:AY114697
EMBL:CP002685EnsemblPlants:AT2G43370EnsemblPlants:AT2G43370.1entrez:818938Gene3D:3.30.70.330GeneID:818938Genevisible:Q8VY74
GO:GO:0000166GO:GO:0003676GO:GO:0005634GO:GO:0005681GO:GO:0006397GO:GO:0008380GO:GO:0016607
GO:GO:0034693hmmpanther:PTHR13952hmmpanther:PTHR13952:SF6HOGENOM:HOG000006374InParanoid:Q8VY74IntAct:Q8VY74InterPro:IPR000504
InterPro:IPR012677KEGG:ath:AT2G43370KO:K13155OMA:CYNAGLYPaxDb:Q8VY74Pfam:PF00076Pfam:Q8VY74
Pfscan:PS50102PhylomeDB:Q8VY74PIR:C84865PRIDE:Q8VY74PRO:PR:Q8VY74PROSITE:PS50102ProteinModelPortal:Q8VY74
Proteomes:UP000006548Reactome:R-ATH-72165RefSeq:NP_850395.1SMART:SM00360SMR:Q8VY74STRING:3702.AT2G43370.1SUPFAM:SSF54928
TAIR:AT2G43370UniGene:At.42685UniProt:Q8VY74
Coordinates (TAIR10) chr2:+:18013431..18015376
Molecular Weight (calculated) 38377.70 Da
IEP (calculated) 10.10
GRAVY (calculated) -1.25
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)