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AT2G43280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.790
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Far-red impaired responsive (FAR1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Far-red impaired responsive (FAR1) family protein; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: Far-red impaired responsive (FAR1) family protein (TAIR:AT3G07500.1); Has 806 Blast hits to 746 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 806; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXB1eggNOG:ENOG411181WEMBL:BT002891EMBL:BT004409EMBL:CP002685EnsemblPlants:AT2G43280EnsemblPlants:AT2G43280.1
entrez:818930GeneID:818930GO:GO:0006355Gramene:AT2G43280.1hmmpanther:PTHR31669hmmpanther:PTHR31669:SF44HOGENOM:HOG000090425
InterPro:IPR004330InterPro:IPR031052KEGG:ath:AT2G43280ncoils:CoilOMA:CAAYKEQPANTHER:PTHR31669Pfam:PF03101
PhylomeDB:Q84J94Proteomes:UP000006548RefSeq:NP_181857.2STRING:3702.AT2G43280.1TAIR:AT2G43280UniGene:At.36909UniProt:Q84J94
Coordinates (TAIR10) chr2:+:17989739..17990861
Molecular Weight (calculated) 24020.70 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.86
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDEDDPTTK NSNNTDDFAI EPREGIIFES EDAAKMFYDD YSRRLGFVMR VMSCRRSEKD GRILARRFGC NKEGHCVSIR GKFGSVRKPR PSTREGCKAM
101: IHVKYDRSGK WVITKFVKEH NHPLVVSPRE ARHTLDEKDK RIQELTIELR NKKRLCAAYK EQLDAFAKIV EEHSNQIAKK VENVVNNLKE FEHLEHALLR
201: SKQDAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)