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AT2G43130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.982
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
encodes a protein belonging to the Rab/Ypt family of small GTPases, which are implicated in intracellular vesicular traffic.
Computational
Description (TAIR10)
ARA4; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: response to heat, inter-Golgi cisterna vesicle-mediated transport; LOCATED IN: trans-Golgi network, Golgi stack, plasma membrane, Golgi-associated vesicle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Rab11-related (InterPro:IPR015595), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 26465 Blast hits to 26427 proteins in 733 species: Archae - 21; Bacteria - 130; Metazoa - 13921; Fungi - 3601; Plants - 3013; Viruses - 20; Other Eukaryotes - 5759 (source: NCBI BLink).
Protein Annotations
BioGrid:4252eggNOG:COG1100eggNOG:KOG0087EMBL:AC004450EMBL:AK317205EMBL:BT025784EMBL:CP002685
EMBL:D01026EnsemblPlants:AT2G43130EnsemblPlants:AT2G43130.1entrez:818915Gene3D:3.40.50.300GeneID:818915Genevisible:P28187
GO:GO:0000139GO:GO:0003924GO:GO:0005525GO:GO:0005795GO:GO:0005798GO:GO:0005802GO:GO:0005829
GO:GO:0005886GO:GO:0007264GO:GO:0009408GO:GO:0015031GO:GO:0048219Gramene:AT2G43130.1hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF394HOGENOM:HOG000233968InParanoid:P28187InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417iPTMnet:P28187
KEGG:ath:AT2G43130OMA:YKEELTVPaxDb:P28187Pfam:P28187Pfam:PF00071Pfscan:PS51419PhylomeDB:P28187
PIR:JS0641PRIDE:P28187PRO:PR:P28187PROSITE:PS51419ProteinModelPortal:P28187Proteomes:UP000006548RefSeq:NP_181842.1
SMR:P28187STRING:3702.AT2G43130.1SUPFAM:SSF52540TAIR:AT2G43130tair10-symbols:ARA-4tair10-symbols:ARA4tair10-symbols:ATRAB11F
tair10-symbols:ATRABA5Ctair10-symbols:RABA5CTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.259UniProt:P28187
Coordinates (TAIR10) chr2:-:17929899..17930904
Molecular Weight (calculated) 23982.10 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.41
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDDDERGEE YLFKIVIIGD SAVGKSNLLT RYARNEFNPN SKATIGVEFQ TQSMLIDGKE VKAQIWDTAG QERFRAVTSA YYRGAVGALV VYDITRSSTF
101: ENVGRWLDEL NTHSDTTVAK MLIGNKCDLE SIRAVSVEEG KSLAESEGLF FMETSALDST NVKTAFEMVI REIYSNISRK QLNSDSYKEE LTVNRVSLVK
201: NENEGTKTFS CCSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)