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AT2G43060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ILI1 binding bHLH 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ILI1 binding bHLH 1 (IBH1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); Has 261 Blast hits to 261 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:4245eggNOG:ENOG410J2DZeggNOG:ENOG410YYI2EMBL:AC006224
EMBL:AJ576045EMBL:AY062456EMBL:AY093279EMBL:CP002685
EnsemblPlants:AT2G43060EnsemblPlants:AT2G43060.1entrez:818908GeneID:818908
Genevisible:Q9SKX1GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009740GO:GO:0009742GO:GO:0040008Gramene:AT2G43060.1
hmmpanther:PTHR33124hmmpanther:PTHR33124:SF5HOGENOM:HOG000146367InParanoid:Q9SKX1
IntAct:Q9SKX1InterPro:IPR011598iPTMnet:Q9SKX1KEGG:ath:AT2G43060
OMA:TDVPEKDPaxDb:Q9SKX1Pfam:Q9SKX1PIR:E84861
PRIDE:Q9SKX1PRO:PR:Q9SKX1ProteinModelPortal:Q9SKX1Proteomes:UP000006548
RefSeq:NP_181834.1STRING:3702.AT2G43060.1SUPFAM:SSF47459TAIR:AT2G43060
tair10-symbols:IBH1UniGene:At.27337UniProt:Q9SKX1
Coordinates (TAIR10) chr2:+:17909247..17909717
Molecular Weight (calculated) 17825.70 Da
IEP (calculated) 11.10
GRAVY (calculated) -0.67
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)