suba logo
AT2G43050.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPMEPCRD; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 61 (TAIR:AT3G59010.1); Has 2811 Blast hits to 2766 proteins in 383 species: Archae - 6; Bacteria - 712; Metazoa - 3; Fungi - 199; Plants - 1866; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G43050-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IVDWEMBL:AC006224EMBL:BT023433EMBL:CP002685
EnsemblPlants:AT2G43050EnsemblPlants:AT2G43050.1entrez:818907Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:818907Genevisible:Q9SKX2
GO:GO:0005576GO:GO:0005618GO:GO:0030599GO:GO:0042545GO:GO:0043086GO:GO:0045330GO:GO:0045490
GO:GO:0046910GO:GO:0071944Gramene:AT2G43050.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF29
HOGENOM:HOG000217409InParanoid:Q9SKX2InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT2G43050OMA:AGPKSEQPaxDb:Q9SKX2Pfam:PF01095Pfam:PF04043
Pfam:Q9SKX2PhylomeDB:Q9SKX2PIR:D84861PRIDE:Q9SKX2PRO:PR:Q9SKX2PROSITE:PS00503ProteinModelPortal:Q9SKX2
Proteomes:UP000006548RefSeq:NP_181833.1scanprosite:PS00503SMART:SM00856SMR:Q9SKX2STRING:3702.AT2G43050.1SUPFAM:SSF101148
SUPFAM:SSF51126TAIR:AT2G43050tair10-symbols:ATPMEPCRDUniGene:At.43649UniGene:At.67744UniGene:At.74784UniGene:At.74860
UniPathway:UPA00545UniProt:Q9SKX2
Coordinates (TAIR10) chr2:+:17902508..17904174
Molecular Weight (calculated) 56591.80 Da
IEP (calculated) 8.90
GRAVY (calculated) -0.28
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSISNH KIPNTLMFLV IVNFLYLIQT NSAVSISSNS NSHFSRFSRH RSSPSSKTKQ GFLATVQESM NHALLARSLA FNLTLSHRTV QTHTFDPIHD
101: CLELLDDTLD MLSRIHADND EEDVHTWLSA ALTNQDTCEQ SLQEKSESYK HGLAMDFVAR NLTGLLTSSL DLFVSVKSKH RKLLSKQEYF PTFVPSSEQR
201: RLLEAPVEEL NVDAVVAPDG SGTHKTIGEA LLSTSLASSG GRTKIYLKAG TYHENINIPT KQKNVMLVGD GKGKTVIVGS RSNRGGWTTY KTATVAAMGE
301: GFIARDMTFV NNAGPKSEQA VALRVGADKS VVHRCSVEGY QDSLYTHSKR QFYRETDITG TVDFIFGNSA VVFQSCNIAA RKPLPGQRNF VTAQGRSNPG
401: QNTGIAIQNC RITAESMTYL GRPWKEYSRT VVMQSFIGGS IHPSGWSPWS GGFGLKSLFY GEYGNSGPGS SVSGRVKWSG CHPSLTVTEA EKFTVASFID
501: GNIWLPSTGV SFDPGLVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)