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AT2G42990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G04570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G42990-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IG92EMBL:AC006580EMBL:AC006931EMBL:AK175715
EMBL:AK176128EMBL:AK176137EMBL:BT011672EMBL:CP002685EnsemblPlants:AT2G42990EnsemblPlants:AT2G42990.1entrez:818901
Gene3D:3.40.50.1110GeneID:818901Genevisible:Q67ZI9GO:GO:0005576GO:GO:0016042GO:GO:0016788Gramene:AT2G42990.1
hmmpanther:PTHR22835hmmpanther:PTHR22835:SF276HOGENOM:HOG000237650InParanoid:Q67ZI9InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT2G42990
OMA:CARSYNDPaxDb:Q67ZI9Pfam:PF00657Pfam:Q67ZI9PhylomeDB:Q67ZI9PIR:F84860PRIDE:Q67ZI9
PRO:PR:Q67ZI9ProteinModelPortal:Q67ZI9Proteomes:UP000006548RefSeq:NP_181827.2STRING:3702.AT2G42990.1SUPFAM:SSF52266TAIR:AT2G42990
TMHMM:TMhelixUniGene:At.50133UniProt:Q67ZI9
Coordinates (TAIR10) chr2:+:17879056..17880200
Molecular Weight (calculated) 39201.60 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.07
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MATHYLSPSI LCIILTTLVS IAGAKIPAII VFGDSSVDSG NNNFISTMAR ANFEPYGRDF PGGRATGRFC NGRLSSDFTS EAYGLKPTVP AYLDPSYNIS
101: DFATGVCFAS AGTGYDNSTA DVLGVIPLWK EVEYFKEYQS NLSAYLGHRR AAKIIRESLY IVSIGTNDFL ENYYTLPDRR SQFSISQYQD FLVEIAEVFL
201: KDIYRLGARK MSFTGISPMG CLPLERVTNL DDPFSCARSY NDLAVDFNGR LRRLVTKLNR ELTGIKIYFA NPYDIMWDIV TKPNLYGLEI SSSACCGTGL
301: FEMGFLCGQD NPLTCSDANK FVFWDAFHPT ERTNQIVSDH FFKHLKNLFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)