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AT2G42940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Predicted AT-hook DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Predicted AT-hook DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT2G35270.1); Has 767 Blast hits to 762 proteins in 28 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 756; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEMZeggNOG:ENOG41119VGEMBL:AC006580EMBL:AC006931
EMBL:BR000352EMBL:BT010721EMBL:BT010995EMBL:CP002685
EnsemblPlants:AT2G42940EnsemblPlants:AT2G42940.1entrez:818895GeneID:818895
Genevisible:Q9SJG4GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0010208GO:GO:0010228GO:GO:0010529GO:GO:0031490
GO:GO:0035067GO:GO:1900111Gramene:AT2G42940.1hmmpanther:PTHR31100
hmmpanther:PTHR31100:SF17HOGENOM:HOG000239043IntAct:Q9SJG4InterPro:IPR005175
InterPro:IPR014476KEGG:ath:AT2G42940OMA:SIEGEMAPaxDb:Q9SJG4
Pfam:PF03479Pfam:Q9SJG4Pfscan:PS51742PhylomeDB:Q9SJG4
PIR:B84860PIRSF:PIRSF016021PRIDE:Q9SJG4PRO:PR:Q9SJG4
PROSITE:PS51742ProteinModelPortal:Q9SJG4Proteomes:UP000006548RefSeq:NP_181822.1
SMR:Q9SJG4STRING:3702.AT2G42940.1SUPFAM:SSF117856TAIR:AT2G42940
TMHMM:TMhelixUniGene:At.45674UniGene:At.73075UniProt:Q9SJG4
Coordinates (TAIR10) chr2:-:17862497..17863270
Molecular Weight (calculated) 27005.40 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.23
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)