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AT2G42920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48910.1); Has 37919 Blast hits to 14277 proteins in 266 species: Archae - 0; Bacteria - 16; Metazoa - 156; Fungi - 107; Plants - 36994; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006580EMBL:AC006931EMBL:AK229283EMBL:CP002685EnsemblPlants:AT2G42920
EnsemblPlants:AT2G42920.1entrez:818893Gene3D:1.25.40.10GeneID:818893Genevisible:Q9SJG6GO:GO:0009507Gramene:AT2G42920.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF485HOGENOM:HOG000237569InParanoid:Q9SJG6InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G42920
OMA:SRASRCHPaxDb:Q9SJG6Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q9SJG6
Pfscan:PS51375PhylomeDB:Q9SJG6PIR:H84859PRIDE:Q9SJG6PRO:PR:Q9SJG6PROSITE:PS51375ProteinModelPortal:Q9SJG6
Proteomes:UP000006548RefSeq:NP_181820.1SMR:Q9SJG6STRING:3702.AT2G42920.1SUPFAM:SSF48452TAIR:AT2G42920TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.73075UniProt:Q9SJG6
Coordinates (TAIR10) chr2:+:17858705..17860384
Molecular Weight (calculated) 62659.90 Da
IEP (calculated) 5.40
GRAVY (calculated) 0.02
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPTILSFSG VTVPAMPSSG SLSGNTYLRL IDTQCSTMRE LKQIHASLIK TGLISDTVTA SRVLAFCCAS PSDMNYAYLV FTRINHKNPF VWNTIIRGFS
101: RSSFPEMAIS IFIDMLCSSP SVKPQRLTYP SVFKAYGRLG QARDGRQLHG MVIKEGLEDD SFIRNTMLHM YVTCGCLIEA WRIFLGMIGF DVVAWNSMIM
201: GFAKCGLIDQ AQNLFDEMPQ RNGVSWNSMI SGFVRNGRFK DALDMFREMQ EKDVKPDGFT MVSLLNACAY LGASEQGRWI HEYIVRNRFE LNSIVVTALI
301: DMYCKCGCIE EGLNVFECAP KKQLSCWNSM ILGLANNGFE ERAMDLFSEL ERSGLEPDSV SFIGVLTACA HSGEVHRADE FFRLMKEKYM IEPSIKHYTL
401: MVNVLGGAGL LEEAEALIKN MPVEEDTVIW SSLLSACRKI GNVEMAKRAA KCLKKLDPDE TCGYVLLSNA YASYGLFEEA VEQRLLMKER QMEKEVGCSS
501: IEVDFEVHEF ISCGGTHPKS AEIYSLLDIL NWDVSTIKSG FAELFDATTR IGFTYLAEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)