suba logo
AT2G42800.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:23990937 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 29
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 29 (RLP29); LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G80080.1); Has 95156 Blast hits to 31366 proteins in 1102 species: Archae - 33; Bacteria - 5084; Metazoa - 23826; Fungi - 961; Plants - 59193; Viruses - 0; Other Eukaryotes - 6059 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AC006931EMBL:BT023464EMBL:CP002685EnsemblPlants:AT2G42800EnsemblPlants:AT2G42800.1
entrez:818880Gene3D:3.80.10.10GeneID:818880GO:GO:0009505GO:GO:0031225Gramene:AT2G42800.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF89HOGENOM:HOG000238246InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675KEGG:ath:AT2G42800OMA:HVSRLDF
Pfam:PF13855PhylomeDB:Q9SJH6PIR:D84858Proteomes:UP000006548RefSeq:NP_181808.1SMART:SM00369SMR:Q9SJH6
STRING:3702.AT2G42800.1SUPFAM:SSF52058TAIR:AT2G42800tair10-symbols:AtRLP29tair10-symbols:RLP29UniGene:At.14156UniProt:Q9SJH6
Coordinates (TAIR10) chr2:-:17808157..17809545
Molecular Weight (calculated) 50803.60 Da
IEP (calculated) 9.69
GRAVY (calculated) 0.01
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMKRALPSP SSLLFFFLLI TPLFLCQENR VSASMPPSES ETLFKIMESM SSDQQWRQSH PNPCAPGSSW PGIECKTGPD HLSHVSRLDF GSAPNPSCKS
101: SASFPSSIFT LPFLQSVFFF NCFTHFPTTI MFPIKLIPNS SLQQLSLRSN PSLSGQIPPR ISSLKSLQIL TLSQNRLTGD IPPAIFSLKS LVHLDLSYNK
201: LTGKIPLQLG NLNNLVGLDL SYNSLTGTIP PTISQLGMLQ KLDLSSNSLF GRIPEGVEKL RSLSFMALSN NKLKGAFPKG ISNLQSLQYF IMDNNPMFVA
301: LPVELGFLPK LQELQLENSG YSGVIPESYT KLTNLSSLSL ANNRLTGEIP SGFESLPHVF HLNLSRNLLI GVVPFDSSFL RRLGKNLDLS GNRGLCLNPE
401: DEFSVVKTGV DVCGKNVSSG GGLSVHSSKK KSQASRYYRS CFFANALFPF ALFLGLHQRW VL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)