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AT2G42790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : citrate synthase 3
Curator
Summary (TAIR10)
Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.
Computational
Description (TAIR10)
citrate synthase 3 (CSY3); FUNCTIONS IN: citrate (SI)-synthase activity; INVOLVED IN: fatty acid beta-oxidation, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, type II (InterPro:IPR010953), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141), Citrate synthase active site (InterPro:IPR019810); BEST Arabidopsis thaliana protein match is: citrate synthase 2 (TAIR:AT3G58750.1); Has 13520 Blast hits to 13518 proteins in 3201 species: Archae - 174; Bacteria - 8544; Metazoa - 357; Fungi - 325; Plants - 176; Viruses - 0; Other Eukaryotes - 3944 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0372eggNOG:KOG2617EMBL:AK227008EnsemblPlants:AT2G42790EnsemblPlants:AT2G42790.1entrez:818879ExpressionAtlas:Q0WUX6
Gene3D:1.10.230.10Gene3D:1.10.580.10GeneID:818879GO:GO:0006099GO:GO:0046912Gramene:AT2G42790.1gramene_pathway:2.3.3.1
gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-5690gramene_pathway:PWY-6549gramene_pathway:PWYQT-4481hmmpanther:PTHR11739hmmpanther:PTHR11739:SF4InterPro:IPR002020
InterPro:IPR016142InterPro:IPR016143InterPro:IPR019810KEGG:ath:AT2G42790KO:K01647OMA:NKEDGVRPANTHER:PTHR11739
PaxDb:Q0WUX6Pfam:PF00285Pfam:Q9SJH7PhylomeDB:Q0WUX6PRIDE:Q0WUX6PRINTS:PR00143PROSITE:PS00480
ProteinModelPortal:Q0WUX6RefSeq:NP_181807.1scanprosite:PS00480SMR:Q0WUX6STRING:3702.AT2G42790.1SUPFAM:SSF48256TAIR:AT2G42790
tair10-symbols:CSY3UniGene:At.19848UniGene:At.75577UniProt:Q0WUX6UniProt:Q9SJH7
Coordinates (TAIR10) chr2:-:17803132..17805991
Molecular Weight (calculated) 56178.40 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.21
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)