suba logo
AT2G42740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ribosomal protein large subunit 16A
Curator
Summary (TAIR10)
encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.
Computational
Description (TAIR10)
ribosomal protein large subunit 16A (RPL16A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: Ribosomal L5P family protein (TAIR:AT5G45775.2); Has 7901 Blast hits to 7901 proteins in 2837 species: Archae - 312; Bacteria - 5129; Metazoa - 255; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0094eggNOG:KOG0397EMBL:AK228536EnsemblPlants:AT2G42740
EnsemblPlants:AT2G42740.1entrez:818874ExpressionAtlas:Q0WQZ1Gene3D:3.30.1440.10
GeneID:818874GO:GO:0003735GO:GO:0005840GO:GO:0006412
GO:GO:0022625Gramene:AT2G42740.1hmmpanther:PTHR11994hmmpanther:PTHR11994:SF14
InterPro:IPR002132InterPro:IPR020929InterPro:IPR022803InterPro:IPR031309
InterPro:IPR031310KEGG:ath:AT2G42740KO:K02868OMA:EDTMAWF
PaxDb:Q0WQZ1Pfam:P42795Pfam:PF00281Pfam:PF00673
PhylomeDB:Q0WQZ1PIRSF:PIRSF002161PRIDE:P42795PRIDE:Q0WQZ1
PROSITE:PS00358ProteinModelPortal:Q0WQZ1RefSeq:NP_850376.2scanprosite:PS00358
SMR:Q0WQZ1STRING:3702.AT2G42740.1SUPFAM:SSF55282TAIR:AT2G42740
tair10-symbols:RPL16AUniGene:At.50823UniProt:P42795UniProt:Q0WQZ1
Coordinates (TAIR10) chr2:+:17791794..17792946
Molecular Weight (calculated) 20832.40 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.46
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)