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AT2G42530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cold regulated 15b
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cold regulated 15b (COR15B); INVOLVED IN: response to cold, defense response to fungus; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cold-regulated 15a (TAIR:AT2G42540.2); Has 194 Blast hits to 148 proteins in 43 species: Archae - 0; Bacteria - 18; Metazoa - 5; Fungi - 6; Plants - 155; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXCBeggNOG:ENOG411043JEMBL:AC007087EMBL:AY045809EMBL:AY085876EMBL:AY091440EMBL:CP002685
EMBL:FJ156734EMBL:L24070EnsemblPlants:AT2G42530EnsemblPlants:AT2G42530.1entrez:818853GeneID:818853Genevisible:Q9SIN5
GO:GO:0005534GO:GO:0008289GO:GO:0009409GO:GO:0009507GO:GO:0009570GO:GO:0009631GO:GO:0009737
GO:GO:0009941GO:GO:0010150GO:GO:0050832Gramene:AT2G42530.1hmmpanther:PTHR23241hmmpanther:PTHR23241:SF49HOGENOM:HOG000093206
KEGG:ath:AT2G42530OMA:MGSSFHNPaxDb:Q9SIN5Pfam:Q9SIN5PhylomeDB:Q9SIN5PIR:S43320PRIDE:Q9SIN5
PRO:PR:Q9SIN5ProteinModelPortal:Q9SIN5Proteomes:UP000006548RefSeq:NP_181781.1STRING:3702.AT2G42530.1TAIR:AT2G42530tair10-symbols:COR15B
UniGene:At.299UniGene:At.67639UniProt:Q9SIN5
Coordinates (TAIR10) chr2:-:17709191..17709873
Molecular Weight (calculated) 14961.60 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.54
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSLSGAVL SGMGSSFHNV GAKQSGVGTV RVGRKSELVV VAQRKKSLIY AVKSDGNILD DLNEATKKAS DFVTDKTKEA LADGEKTKDY IVEKTIEANE
101: TATEEAKKAL DYVTEKGKEA GNKAAEFVEG KAEEAKNATK S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)