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AT2G42395.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUZ3eggNOG:ENOG41106E0EMBL:AK227429EMBL:BT005839
EMBL:CP002685EnsemblPlants:AT2G42395EnsemblPlants:AT2G42395.1entrez:2745592
GeneID:2745592Gramene:AT2G42395.1HOGENOM:HOG000147080IntAct:Q84TF7
KEGG:ath:AT2G42395OMA:YLFCCENPhylomeDB:Q84TF7Proteomes:UP000006548
RefSeq:NP_973671.1STRING:3702.AT2G42395.1TAIR:AT2G42395UniGene:At.47790
UniProt:Q84TF7
Coordinates (TAIR10) chr2:-:17653566..17653980
Molecular Weight (calculated) 11915.20 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.79
Length 104 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKNSGSSFE AEKSEGKCVT TTTEAQQSSQ PVLSKEEEKV RDSYLFCCEN FYTLPEMINF MKEIHGVEQT TVTKVFRELL KGRKAEAYLR ESQKRMKART
101: TTTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)