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AT2G42390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein kinase C substrate, heavy chain-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protein kinase C substrate, heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G56360.1); Has 584 Blast hits to 561 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 322; Fungi - 119; Plants - 62; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPE3eggNOG:KOG2397EMBL:AC005956EMBL:AK229713EMBL:AY084977EMBL:BT008571EMBL:BT008660
EMBL:CP002685EnsemblPlants:AT2G42390EnsemblPlants:AT2G42390.1entrez:818840GeneID:818840GO:GO:0016021GO:GO:0016301
Gramene:AT2G42390.1hmmpanther:PTHR12630hmmpanther:PTHR12630:SF7HOGENOM:HOG000238273InterPro:IPR028146KEGG:ath:AT2G42390OMA:CKDESKS
Pfam:PF12999PhylomeDB:Q9SLC0PIR:D84853Proteomes:UP000006548RefSeq:NP_565971.1SMR:Q9SLC0STRING:3702.AT2G42390.1
TAIR:AT2G42390TMHMM:TMhelixUniGene:At.42712UniProt:Q9SLC0
Coordinates (TAIR10) chr2:-:17651381..17652509
Molecular Weight (calculated) 23750.80 Da
IEP (calculated) 8.54
GRAVY (calculated) -0.14
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLQCVVLCS SLAVVVISVA STSPLVGVHP LDEKYFDSDV IKCKDGSKSF TRDRLNDNFC DCLDGTDEPG TSACPNGKFY CRNIGSSPKF VYSSRVNDRI
101: CDCCDGSDEY ESSIHCPNTC IMGGNVNYIY KPRANLKSIH LQLGSTPHPK EFYTIGNLQD MVKNLQGMKL VFALQMVFIG FLVILWMLRS RARSKRRRYL
201: LKNVPPINRS AN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)