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AT2G42370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits to 191 proteins in 60 species: Archae - 3; Bacteria - 23; Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDY4eggNOG:ENOG410XQS3EMBL:AC005956EMBL:CP002685
EnsemblPlants:AT2G42370EnsemblPlants:AT2G42370.1entrez:818838GeneID:818838
Gramene:AT2G42370.1hmmpanther:PTHR35120hmmpanther:PTHR35120:SF2HOGENOM:HOG000153234
KEGG:ath:AT2G42370ncoils:CoilOMA:LWIKEYEPhylomeDB:Q9SLC2
PIR:B84853Proteomes:UP000006548RefSeq:NP_181766.1STRING:3702.AT2G42370.1
TAIR:AT2G42370UniGene:At.68419UniGene:At.70550UniProt:Q9SLC2
Coordinates (TAIR10) chr2:+:17643334..17645533
Molecular Weight (calculated) 82435.60 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.72
Length 715 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPPANPFAS REQDTVTILR NLIKQATLEE EVSEASETHS VPNKIRILES VSDEMRKSQE NGSDQKQLSE EDEIDILDSK AMSFSFSCHG GGPKRKKCND
101: KKRKQQEEKS KKKLKVLVET LKLVPFKPLK TLDFACYESL LKTLGLWDFV HLEFDQDMDY DLVAQLIASY SAGGKCSYIN GSRIKLSRAD LARSLKLPNK
201: KERVVILDED KEFLESDESI SVVEDVISNW MLLHCDDAWM MPDEVVEWMK GIKKKQLDKL DWAGLMWFMV EKELKAEPPL GDCFYASHLQ MVIRSQKIDL
301: FKERDLKVKD DIAALNLGMD DGATDSKKEN CVEESTTKLN LGQVIVSEMA ATMELYHEEQ AIDLEENKEQ PMDLKEAKEE GDEMEWRQPY EKNGTRHRKV
401: GENEILEDEI EKDGEKQEGG FLLFRNGKTL HQENLMLGDT STLGYNSGLQ VHGSSTCDFL APRAVMHMVP GRSHFGNDNK REFGHENDIS YHFDNPASTK
501: RLKTPSWDDK PVPFDICMEQ IKHLADKAKL SYVEKDQACG ESNMREQMLQ NELQRREDII QQLHKESYEE LHKKNVEIYK LENELRMMTS VLAWYQKALK
601: ESQKACRKHR KVCPLLDKPI YIDVKGTGGL VLSTAEIEKL RLKEEKEEGM RRVLIERQVK EVGSLWIKEY EVNLKKKVEL LDGKLIGFQN KMKLLKETIS
701: RRESISARFD ATSNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)