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AT2G42350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.922
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42360.1); Has 9654 Blast hits to 9629 proteins in 290 species: Archae - 0; Bacteria - 0; Metazoa - 2581; Fungi - 703; Plants - 5073; Viruses - 58; Other Eukaryotes - 1239 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC005956EMBL:BT010853EMBL:BT011323EMBL:CP002685EnsemblPlants:AT2G42350
EnsemblPlants:AT2G42350.1entrez:818836Gene3D:3.30.40.10GeneID:818836Genevisible:Q9SLC4GO:GO:0008270GO:GO:0016021
GO:GO:0016567Gramene:AT2G42350.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF117HOGENOM:HOG000034168InParanoid:Q9SLC4InterPro:IPR001841
InterPro:IPR013083iPTMnet:Q9SLC4KEGG:ath:AT2G42350OMA:VAGTECAPaxDb:Q9SLC4Pfam:PF13639Pfam:Q9SLC4
Pfscan:PS50089PhylomeDB:Q9SLC4PIR:H84852PRO:PR:Q9SLC4PROSITE:PS50089ProteinModelPortal:Q9SLC4Proteomes:UP000006548
RefSeq:NP_181764.1SMART:SM00184SMR:Q9SLC4STRING:3702.AT2G42350.1SUPFAM:SSF57850TAIR:AT2G42350TMHMM:TMhelix
UniGene:At.42716UniPathway:UPA00143UniProt:Q9SLC4
Coordinates (TAIR10) chr2:+:17639245..17639898
Molecular Weight (calculated) 24423.70 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.34
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSNNKTDDS DDRSFWQNST SYDASSKIFL VTTVSFSIII IIVFVYYLYA KFVLHRRSAF QDLSFSVVSQ PPKRGLDSLV IASLPTFVVG IKNDVAGTEC
101: AVCLSLLEEK DNARMLPNCK HVFHVSCVDT WLTTQSTCPV CRTEAEPSHP RLEPEPREGP VGDFAPPLDF AGVDNKTGGS SVSRLDSFRR ILTRERSSNR
201: RDHSRVDQDR ELDIERQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)