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AT2G42320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleolar protein gar2-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleolar protein gar2-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57780.1); Has 15829 Blast hits to 1361 proteins in 222 species: Archae - 4; Bacteria - 14530; Metazoa - 601; Fungi - 195; Plants - 122; Viruses - 6; Other Eukaryotes - 371 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEU7eggNOG:ENOG410XXIEEMBL:AC005956EMBL:CP002685EnsemblPlants:AT2G42320EnsemblPlants:AT2G42320.1EnsemblPlants:AT2G42320.2
entrez:818833GeneID:818833Gramene:AT2G42320.1Gramene:AT2G42320.2hmmpanther:PTHR31344hmmpanther:PTHR31344:SF4HOGENOM:HOG000243212
KEGG:ath:AT2G42320ncoils:CoilOMA:TFGISHQPhylomeDB:Q9SLC7PIR:E84852Proteomes:UP000006548RefSeq:NP_001031531.1
RefSeq:NP_181761.1TAIR:AT2G42320UniGene:At.43444UniGene:At.49245UniProt:Q9SLC7
Coordinates (TAIR10) chr2:+:17628102..17630657
Molecular Weight (calculated) 74215.70 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.54
Length 669 amino acids
Sequence (TAIR10)
(BLAST)
001: MKARTTNNVV QSKRSTKSVR KDQKLQKTNS QKKTEQEKHK DLDTKEESSN ISTVASDSTI QSDPSESYET VDVRYLDDDN GVIASADAHQ ESDSSSVVDK
101: TEKEHNLSGS ICDLEKDVDE QECKDANIDK DAREGISADV WEDASNGALS AGSENEAADV TENNGGNFED GSSEEKIERL ETRIEKLEEE LREVAALEIS
201: LYSVVPDHCS SAHKLHTPAR RISRIYIHAC KHFTQGKRAT IARNSVSGLV LVAKSCGNDV SRLTFWLSNI IALRQIISQA FGRSRITQIS EPNESGNSDS
301: GKKTNLRWKN GFQQLLEDWQ ETETFTTALE KIEFWVFSRI VESVWWQVFT PHMQSPEDDS SASKSNGKLM GPSLGDQNQG TFSISLWKNA FRDALQRICP
401: MRGAGHECGC LPVLARMVMD KCIGRFDVAM FNAILRESEH QIPTDPVSDP ILDSKVLPIP AGDLSFGSGA QLKNAIGNWS RCLTEMFGMN SDDSSAKEKR
501: NSEDDHVESK AFVLLNELSD LLMLPKDMLM EISIREEICP SISLPLIKRI LCNFTPDEFC PDQVPGAVLE ELNAAESIGD RKLSEASFPY AASSVSYMPP
601: STMDIAEKVA EASAKLSRNV SMIQRKGYTS DEELEELDSP LTSIVDKASD FTGSATSNAR YKLLRQVWV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)