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AT2G42290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.532
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G57830.1); Has 122940 Blast hits to 81081 proteins in 2563 species: Archae - 92; Bacteria - 8297; Metazoa - 26465; Fungi - 4678; Plants - 71242; Viruses - 178; Other Eukaryotes - 11988 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G42290-MONOMEReggNOG:ENOG410IE51eggNOG:ENOG410YF7EEMBL:AC005956EMBL:CP002685EMBL:FJ708713EnsemblPlants:AT2G42290
EnsemblPlants:AT2G42290.1entrez:818830Gene3D:3.80.10.10GeneID:818830GO:GO:0004672GO:GO:0005524GO:GO:0016021
Gramene:AT2G42290.1hmmpanther:PTHR27008hmmpanther:PTHR27008:SF41HOGENOM:HOG000116554InterPro:IPR000719InterPro:IPR001611InterPro:IPR011009
InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT2G42290OMA:TWRFKDFPfam:PF00069Pfam:PF00560Pfam:PF08263
Pfscan:PS50011PhylomeDB:Q9SLD0PIR:B84852PIR:T00938PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_181758.1
SMR:Q9SLD0STRING:3702.AT2G42290.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT2G42290UniGene:At.42729UniProt:Q9SLD0
Coordinates (TAIR10) chr2:-:17616992..17619472
Molecular Weight (calculated) 71076.70 Da
IEP (calculated) 7.45
GRAVY (calculated) -0.19
Length 646 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLPSILSLV VSSIFLCMSF CSSLNSDGLS LLALKSAVDN DPTRVMTHWS ESDPTPCHWS GIVCTNGRVT TLVLFGKSLS GYIPSELGLL NSLNRLDLAH
101: NNFSKTIPVR LFEATKLRYI DLSHNSLSGP IPAQIKSMKS LNHLDFSSNH LNGSLPESLT ELGSLVGTLN FSFNQFTGEI PPSYGRFRVH VSLDFSHNNL
201: TGKVPQVGSL LNQGPNAFAG NSHLCGFPLQ TPCEKIKTPN FVAAKPEGTQ ELQKPNPSVI SNDDAKEKKQ QITGSVTVSL ISGVSVVIGA VSLSVWLIRR
301: KRSSDGYNSE TKTTTVVSEF DEEGQEGKFV AFDEGFELEL EDLLRASAYV IGKSRSGIVY RVVAAESSST VVAVRRLSDG NDTWRFKDFV NEVESIGRIN
401: HPNIVRLRAY YYAEDEKLLI TDFINNGSLY SALHGGPSNT RPTLSWAERL CIAQGTARGL MYIHEYSSRK YVHGNLKSSK ILLDNELHPH VSGFGLTRLV
501: SGYPKVTDHS LSSMTQSIDQ GFATRLSVSA PAAAYLAPEA RASSDCKLSH KCDVYSFGVI LLELLTGRLP YGSSENEGEE ELVNVLRKWH KEERSLAEIL
601: DPKLLKQDFA NKQVIATIHV ALNCTEMDPD MRPRMRSVSE ILGRIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)