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AT2G42220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rhodanese/Cell cycle control phosphatase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT3G08920.1); Has 955 Blast hits to 955 proteins in 207 species: Archae - 14; Bacteria - 343; Metazoa - 1; Fungi - 0; Plants - 204; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE1BeggNOG:ENOG4111KQZEMBL:AC002561EMBL:AY045616EMBL:CP002685EnsemblPlants:AT2G42220EnsemblPlants:AT2G42220.1
entrez:818822Gene3D:3.40.250.10GeneID:818822Genevisible:O48529GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0016021Gramene:AT2G42220.1hmmpanther:PTHR12231hmmpanther:PTHR12231:SF111HOGENOM:HOG000243044InParanoid:O48529InterPro:IPR001763
KEGG:ath:AT2G42220OMA:FERAHIKPaxDb:O48529Pfam:O48529Pfam:PF00581Pfscan:PS50206PhylomeDB:O48529
PIR:T00931PRIDE:O48529PRO:PR:O48529PROSITE:PS50206ProteinModelPortal:O48529Proteomes:UP000006548RefSeq:NP_565969.1
SMART:SM00450STRING:3702.AT2G42220.1SUPFAM:SSF52821TAIR:AT2G42220UniGene:At.12443UniGene:At.48581UniProt:O48529
Coordinates (TAIR10) chr2:+:17592105..17593305
Molecular Weight (calculated) 25511.60 Da
IEP (calculated) 8.90
GRAVY (calculated) -0.00
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGIISPSPT ALYFTSNVGG RRLKAVSWAG KSVSGNVIRR RSLRIAAELK FVNAEEAKQL IAEEGYSVVD VRDKTQFERA HIKSCSHIPL FIYNEDNDIG
101: TIIKRTVHNN FSGLFFGLPF TKVNPEFLKS VRNEFSQDSK LLLVCQEGLR SAAAASRLEE AGYENIACVT SGLQSVKPGT FESVGSTELQ NAGKAGLITI
201: QGKISAVLGT VLVCAYLFIQ FFPDQAEKLF PPTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)