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AT2G42200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : squamosa promoter binding protein-like 9
Curator
Summary (TAIR10)
Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. SPL activity nonautonomously inhibits initiation of new leaves at the shoot apical meristem.
Computational
Description (TAIR10)
squamosa promoter binding protein-like 9 (SPL9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, regulation of leaf formation, leaf development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 15 (TAIR:AT3G57920.1); Has 3664 Blast hits to 3108 proteins in 157 species: Archae - 2; Bacteria - 85; Metazoa - 116; Fungi - 125; Plants - 880; Viruses - 2; Other Eukaryotes - 2454 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJWKeggNOG:ENOG410YVZEEMBL:AC002561EMBL:AJ011638EMBL:AJ011639EMBL:AJ011640EMBL:AJ628864
EMBL:AY046007EMBL:AY150378EMBL:CP002685EnsemblPlants:AT2G42200EnsemblPlants:AT2G42200.1entrez:818820Gene3D:4.10.1100.10
GeneID:818820Genevisible:Q700W2GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351
GO:GO:0006355GO:GO:0046872GO:GO:0048366GO:GO:0048653GO:GO:2000025hmmpanther:PTHR31251hmmpanther:PTHR31251:SF23
HOGENOM:HOG000070804InParanoid:Q700W2InterPro:IPR004333KEGG:ath:AT2G42200OMA:GRQYMELPaxDb:Q700W2Pfam:PF03110
Pfam:Q700W2Pfscan:PS51141PhylomeDB:Q700W2PIR:T00929PIR:T52593PRIDE:Q700W2PRO:PR:Q700W2
PROSITE:PS51141ProteinModelPortal:Q700W2Proteomes:UP000006548RefSeq:NP_181749.1SMR:Q700W2STRING:3702.AT2G42200.1SUPFAM:SSF103612
TAIR:AT2G42200tair10-symbols:AtSPL9tair10-symbols:SPL9UniGene:At.498UniProt:Q700W2
Coordinates (TAIR10) chr2:+:17587601..17589451
Molecular Weight (calculated) 40849.00 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.93
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)