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AT2G42140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.978
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G58000.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1S3eggNOG:ENOG410ZA13EMBL:AC002561EMBL:AY074648
EMBL:AY102560EMBL:AY954829EMBL:CP002685EnsemblPlants:AT2G42140
EnsemblPlants:AT2G42140.1entrez:818814GeneID:818814Genevisible:O48522
GO:GO:0005634Gramene:AT2G42140.1hmmpanther:PTHR33143hmmpanther:PTHR33143:SF12
HOGENOM:HOG000241957InterPro:IPR008889KEGG:ath:AT2G42140OMA:YLPFTID
PaxDb:O48522Pfam:O48522Pfam:PF05678PhylomeDB:O48522
PIR:T00924PRIDE:O48522PRO:PR:O48522Proteomes:UP000006548
RefSeq:NP_181744.1STRING:3702.AT2G42140.1TAIR:AT2G42140UniGene:At.64973
UniGene:At.74124UniProt:O48522
Coordinates (TAIR10) chr2:-:17568964..17569482
Molecular Weight (calculated) 19497.90 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.75
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIEATTVQK RRSLPTIAMH KQSRTLTKSK PKIRIIHIFA PEIIKTDVAN FREIVQNLTG KQDHHHHDLP HQKGLKRNPR SRRSHDHHEV HDMNKSHGFC
101: INSDEEEEGM VSMTWNGNGD ESSGGFLNGL GDLDGFIQEL GEFPYLPFTI DPAVASSSHL HGNVFAEPHH YA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)