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AT2G42130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:16648217 (2006): plastid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastoglobulin 34kD (TAIR:AT3G58010.1); Has 81 Blast hits to 81 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT2G42130EnsemblPlants:AT2G42130.1entrez:818813hmmpanther:PTHR31906hmmpanther:PTHR31906:SF16Pfam:PF04755
Coordinates (TAIR10) chr2:+:17566242..17567651
Molecular Weight (calculated) 29833.50 Da
IEP (calculated) 10.27
GRAVY (calculated) -0.01
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MALIHGSVPG TSAVRLVFST SASPSRFCLN VPVVKQGWKN SCRRRVLRAM VQETVQGSPL VYAREMERLS AKESLLLALK DAGGFEALVT GKTTNMQRID
101: VNERITSLER LNPTPRPTTS PCFEGRWNFE WFGSGSPGLL AARVIFERFP STLANLSRME ILIKDANAKA TANIKLLNSI ESKIILSSKL TVEGPLRLKE
201: EYVEGMLETP TVIEEAVPEQ LKSALGQAAT TLQQLPALIK DTLASGLRIP LSKLLYPFFI HLTIFRSNLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)