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AT2G42010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.937
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase D beta 1
Curator
Summary (TAIR10)
phospholipase D (PLDbeta)
Computational
Description (TAIR10)
phospholipase D beta 1 (PLDBETA1); FUNCTIONS IN: phospholipase D activity, protein binding, phosphatidylinositol-4,5-bisphosphate binding; INVOLVED IN: response to cadmium ion, defense response to bacterium, incompatible interaction; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D beta 2 (TAIR:AT4G00240.1); Has 42228 Blast hits to 24253 proteins in 1246 species: Archae - 34; Bacteria - 3967; Metazoa - 15807; Fungi - 8808; Plants - 7882; Viruses - 972; Other Eukaryotes - 4758 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G42010-MONOMERBioCyc:MetaCyc:AT2G42010-MONOMERBioGrid:4139EC:3.1.4.4eggNOG:COG1502eggNOG:KOG1329EMBL:CP002685
EMBL:U84568EMBL:U90439EnsemblPlants:AT2G42010EnsemblPlants:AT2G42010.1entrez:818802Gene3D:2.60.40.150GeneID:818802
Genevisible:P93733GO:GO:0004630GO:GO:0005546GO:GO:0005737GO:GO:0009506GO:GO:0009816GO:GO:0016020
GO:GO:0016042GO:GO:0046686GO:GO:0070290Gramene:AT2G42010.1hmmpanther:PTHR18896hmmpanther:PTHR18896:SF65HOGENOM:HOG000240112
InParanoid:P93733IntAct:P93733InterPro:IPR000008InterPro:IPR001736InterPro:IPR015679InterPro:IPR024632iPTMnet:P93733
KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4KEGG:ath:AT2G42010KO:K01115MINT:MINT-8064634OMA:CPESLECPANTHER:PTHR18896
PaxDb:P93733Pfam:P93733Pfam:PF00168Pfam:PF00614Pfam:PF12357Pfscan:PS50004Pfscan:PS50035
PIR:H84848PRIDE:P93733PRO:PR:P93733PROSITE:PS50004PROSITE:PS50035ProteinModelPortal:P93733Proteomes:UP000006548
RefSeq:NP_565963.2SMART:SM00155SMART:SM00239SMR:P93733STRING:3702.AT2G42010.1SUPFAM:SSF49562SUPFAM:SSF56024
TAIR:AT2G42010tair10-symbols:PLDBETAtair10-symbols:PLDBETA1UniGene:At.14711UniProt:P93733
Coordinates (TAIR10) chr2:-:17533018..17537990
Molecular Weight (calculated) 121107.00 Da
IEP (calculated) 7.48
GRAVY (calculated) -0.56
Length 1083 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)