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AT2G41950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 24 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:818795eggNOG:ENOG410IR81eggNOG:ENOG410YMBUEMBL:AY074625EMBL:AY954827EMBL:CP002685EMBL:U90439
EnsemblPlants:AT2G41950EnsemblPlants:AT2G41950.1entrez:818795GeneID:818795GO:GO:0009505GO:GO:0009507GO:GO:0009570
Gramene:AT2G41950.1hmmpanther:PTHR37217HOGENOM:HOG000239872KEGG:ath:AT2G41950OMA:ISHPQGRPhylomeDB:O23684PIR:B84848
Proteomes:UP000006548RefSeq:NP_181726.1STRING:3702.AT2G41950.1TAIR:AT2G41950UniGene:At.48580UniGene:At.70281UniProt:O23684
Coordinates (TAIR10) chr2:+:17513137..17514029
Molecular Weight (calculated) 30022.60 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.17
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSLSFPSSS SALLPSLVAF DSSRRLSLQP KKLNRLQSHL FSPQHLSFSQ SNVSRYRAFC VSSSSPPEGT VSVVDFHEKD WSFLESMEID STEHTQKIER
101: IIKAGELSES SRVLVSISSE TFVDRLVESS PSQLLLIVHD SLFTLACIKE KYDKVKCWQG EMIYVPEKWS PLDAVFLYFL PALPFDLDEL FKTLSQRCSS
201: GARVVISHPQ GRLGLEQQRK EFSDVVVSDL PDESTLSNVA EKHSFELTQF VDEQGLYLAV LKSSKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)