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AT2G41870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Remorin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Remorin family protein; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT3G57540.1); Has 469 Blast hits to 467 proteins in 36 species: Archae - 0; Bacteria - 7; Metazoa - 9; Fungi - 6; Plants - 437; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWQ7eggNOG:ENOG410YBQGEMBL:AC002339EMBL:AF326883
EMBL:AF339703EMBL:CP002685EMBL:U90439EnsemblPlants:AT2G41870
EnsemblPlants:AT2G41870.1entrez:818787GeneID:818787Gramene:AT2G41870.1
hmmpanther:PTHR31471hmmpanther:PTHR31471:SF14HOGENOM:HOG000242201InterPro:IPR005516
KEGG:ath:AT2G41870ncoils:CoilOMA:NSRTMTAPfam:PF03763
PhylomeDB:P93758PIR:B84847Proteomes:UP000006548RefSeq:NP_181718.1
STRING:3702.AT2G41870.1TAIR:AT2G41870UniGene:At.14701UniProt:P93758
Coordinates (TAIR10) chr2:-:17471119..17472519
Molecular Weight (calculated) 30946.20 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.95
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)