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AT2G41840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S5 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 11596 Blast hits to 10181 proteins in 2924 species: Archae - 262; Bacteria - 5281; Metazoa - 2114; Fungi - 831; Plants - 413; Viruses - 20; Other Eukaryotes - 2675 (source: NCBI BLink).
Protein Annotations
BioGrid:4121eggNOG:COG0098eggNOG:KOG0877EMBL:AC002339
EMBL:AY048250EMBL:AY133561EMBL:CP002685EMBL:Z17622
EnsemblPlants:AT2G41840EnsemblPlants:AT2G41840.1entrez:818784Gene3D:3.30.160.20
Gene3D:3.30.230.10GeneID:818784Genevisible:P49688GO:GO:0003723
GO:GO:0003735GO:GO:0005730GO:GO:0005829GO:GO:0006412
GO:GO:0009506GO:GO:0016020GO:GO:0022626GO:GO:0022627
Gramene:AT2G41840.1hmmpanther:PTHR13718hmmpanther:PTHR13718:SF69HOGENOM:HOG000072596
InParanoid:P49688IntAct:P49688InterPro:IPR000851InterPro:IPR005324
InterPro:IPR005711InterPro:IPR013810InterPro:IPR014720InterPro:IPR014721
InterPro:IPR018192InterPro:IPR020568iPTMnet:P49688KEGG:ath:AT2G41840
KO:K02981OMA:IDFFIGPPANTHER:PTHR13718PaxDb:P49688
Pfam:P49688Pfam:PF00333Pfam:PF03719Pfscan:PS50881
PhylomeDB:P49688PIR:G84846PRIDE:P49688PRO:PR:P49688
PROSITE:PS00585PROSITE:PS50881ProteinModelPortal:P49688Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_181715.1scanprosite:PS00585SMR:P49688STRING:3702.AT2G41840.1
SUPFAM:SSF54211SUPFAM:SSF54768TAIR:AT2G41840TIGRfam:TIGR01020
TIGRFAMs:TIGR01020UniGene:At.12251UniGene:At.67324UniProt:P49688
Coordinates (TAIR10) chr2:-:17460016..17461398
Molecular Weight (calculated) 30880.50 Da
IEP (calculated) 10.98
GRAVY (calculated) -0.41
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERGGERGV ERGGERGDFG RGFGGRGGRG DRGGRGRGGR GGRRGGRASE EEKWVPVTKL GRLVAAGHIK QIEQIYLHSL PVKEYQIIDM LIGPTLKDEV
101: MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
201: ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)