AT2G41830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Uncharacterized protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Uncharacterized protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT5G21080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17450431..17456453 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114342.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||
| Length | 1025 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSAVSGVISR QVLPVCGSLC ILCPALRARS RQPVKRYKKL IAEIFPRNQE EGINDRKIGK LCEYAAKNAV RMPKISDSLE HRCYKELRNE NFHSAKIAMC 0101: IYRRLLVTCK EQIPLFSSGF LRTVQALLDQ TRQDEMQIVG CQSLFEFVIN QKDGSSLFNL EGFLPKLCQL GLEGGDDDRS RSLRAAGLQA LSAMIWLMGE 0201: YSHIPSEFDN VVSAVLENYG HPKILTNAND SGRKWVDEVL KNEGHVAYED SLINVPSWRT VVNDKGELNV KMEDSLDPSF WSKVCLHNMA KLGEEATTMR 0301: RILESLFRNF DEGCLWSTEN SIAFPVLRDL QFLMEISGQR THFLLSMLIK HLDHKSVLKH PSMQLNILEV TSSLSETAKV EHSATIVSAI SDIMRHLRKC 0401: MHSSLDEANL GTDAANCIRM VSVAVDKCLV QLTKKVGDAG PILDAMALML ENISAVTDVA RTTIAAVFRT AQIIASIPNL QYQNKAFPEA LFHQLLQAMV 0501: HPDHKTRIGA HRIFSVVLVP TSVCPRPSST TTDLKKGMGL PRSLSRTASV FSSSAALFEK LKKDKFSSML TSDHSQNGMP EEERGSSTGE ILDRLKSSYR 0601: QAYSTWNQPL TSVVDNSVDL LNSELDVVHI RLSSHQIGLL LSSIWAQSIS PANTPDNYEA IANTYSLVLL FSRVKNSSHD ALIRSFQMAL SLRDISLMEG 0701: GPLPPSRRRS LFTLAASMVL FSSKAFNLFS LADFTKVTLQ GPRLDPFLNL VDDHKLKAVN SDQLKVAYGC EKDDASALDT LSNIALSTEH SRGTLVYEIV 0801: KSLEDMCNSE MDKMREQLLT EFMPDDACPL GTRFLEDTHK TYQIDSGDVK PRKEDAEDQE FGDGTETVTK NNHVTFSEIP DLLTVNQILE SVVETTRQVG 0901: RISFHTAADA SYKEMTLHCE NLLMGKQQKI SSLLNSQLRH ESSVNCSPRQ HDEEIKIASF HPMINSAFHT GVEVPLLSKE FDMKSPRTPV GTIQSPCYAE 1001: LQNNPQAFRL PASSPYDNFL KAAGC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)