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AT2G41780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.905
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC002339EMBL:AK227579EMBL:BT003078EMBL:CP002685EnsemblPlants:AT2G41780EnsemblPlants:AT2G41780.1EnsemblPlants:AT2G41780.2
entrez:818777GeneID:818777Gramene:AT2G41780.1Gramene:AT2G41780.2HOGENOM:HOG000114082KEGG:ath:AT2G41780OMA:TRSEMVD
PIR:A84846Proteomes:UP000006548RefSeq:NP_001078038.1RefSeq:NP_181709.1TAIR:AT2G41780UniGene:At.42790UniProt:O22942
Coordinates (TAIR10) chr2:+:17428157..17428540
Molecular Weight (calculated) 14487.50 Da
IEP (calculated) 9.09
GRAVY (calculated) -0.70
Length 127 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDKTAGGKI VMNKEQLLLF MENRRKQEDH RLALAKEATR SEMVDRKASG KIIMNHDQQL MFNEDHRLAV KKASRSEMVD LEGMGSEASV IMSNVPQPTS
101: FSEDHKLAIK NIISKIVKEI RDRDHPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)