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AT2G41770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF288)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF288); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF288 (InterPro:IPR005049); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF288) (TAIR:AT3G57420.1); Has 196 Blast hits to 196 proteins in 30 species: Archae - 2; Bacteria - 9; Metazoa - 51; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEJ1eggNOG:ENOG410Z6Q8EMBL:AC002339EMBL:AY056269
EMBL:CP002685EnsemblPlants:AT2G41770EnsemblPlants:AT2G41770.1entrez:818776
GeneID:818776GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0016021GO:GO:0016757Gramene:AT2G41770.1hmmpanther:PTHR31362
hmmpanther:PTHR31362:SF1HOGENOM:HOG000242490InterPro:IPR005049KEGG:ath:AT2G41770
OMA:KHSFFETPfam:PF03385PhylomeDB:O22943PIR:H84845
Proteomes:UP000006548RefSeq:NP_565960.1TAIR:AT2G41770TMHMM:TMhelix
UniGene:At.48579UniGene:At.66406UniProt:O22943
Coordinates (TAIR10) chr2:-:17424549..17427042
Molecular Weight (calculated) 88067.10 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.21
Length 771 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVQDRAAPS PAKPPKSQIR ELPTHQQIRR RFSEPKNLDF STWFSENLSR IAVFSLLIVT IVAFFFLYNT TDTASLLCFQ SQSTQFLQSL SRPQIKWNSI
101: PVVPDKTSPY ANFQTEKWIV VSVTKYPTEE LKSLVKIRGW QVLAIGNSAT PKDWSLKGSI FLSLDAQAEL GYRVLDHLPY DSFVRKSVGY LFAIQHGAKK
201: IYDADDRGEV IDGDLGKHFD VELVGLDSKQ EPILQYSHEN PNRTVVNPYI HFGQRSVWPR GLPLENVGEI NHEEYYTEVF GGKQFIQQGI SNGLPDVDSV
301: FYFTRKTTLE AFDIRFDEHS PKVALPQGVM VPVNSFNTLY HSSAFWGLML PVSVSSMASD VLRGYWGQRL LWELGGYVAV YPPTAHRFDR IEAYPFVEEK
401: DLHVNVGRLI KFLLAWRSEK HSFFETVLDL SFAMAEEGFW TEQDLKFTAA WLQDLIAVGY QQPRLMSLEL DRPRASIGHG DRKEFVPRKL PSVHLGVEET
501: GTVSTEIGNL IRWRKNFGNV VLVMFCNGPV ERTALEWRLL YGRIFKTVVI LSSQKNSDLY VEEAKLDHIY KHLPKIFDRY SSAEGFLFVE DDTVLNYWNL
601: LQADKSKIWT TDKVSKSWTS VKPTGNSDWF SVQAELVKKT VSTMPAHFQV NYKDATKNNH ETLTVCSSEV FYVPKRLVTD FIDLVDLVGD MDLHYKVAVP
701: MFFLSMDSPQ NFDPVLGSMV YKRKSASFNT SSSLYSAKAP AVHPWSISSE QDFIKLVQQM AEGDPLLMEL V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)