AT2G41710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Integrase-type DNA-binding superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G54320.1); Has 3603 Blast hits to 3097 proteins in 159 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 3564; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17400274..17402903 | ||||||||
| Molecular Weight (calculated) | 46475.20 Da | ||||||||
| IEP (calculated) | 8.24 | ||||||||
| GRAVY (calculated) | -0.72 | ||||||||
| Length | 423 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK 101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA 201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS 301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS 401: SLTSEVTKTE TSCSTYSYLP QEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)