AT2G41700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ATP-binding cassette A1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ATP-binding cassette A1 (ABCA1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP-binding cassette A2 (TAIR:AT3G47730.1); Has 809471 Blast hits to 378826 proteins in 4091 species: Archae - 14583; Bacteria - 641508; Metazoa - 16186; Fungi - 10844; Plants - 9650; Viruses - 55; Other Eukaryotes - 116645 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17383239..17396110 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 209076.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1882 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGSSKRQFKA MLRKNWLLKT RHPFVTSAEI LLPTIVMLLL IAVRTRVDTT IHPAHSNIDK DTVVEVGKGN SPSFPEVLKL LLAEGDFLAF APDTDETNNM 0101: IDILSLKFPE LRLVTKIFKD DIELETYITS AHYGVCSEVR NCSNPKIKGA VVFHEQGPHL FDYSIRLNHT WAFAGFPNVK SIMDTNGPYI NDLEMGINTI 0201: PTMQYSFSGF LTLQQVVDSF IIFASQQNND LPLSHSNLSS ALRFELPWTL FSPSVIRMVP FPTREYTDDE FQSIVKSVMG LLYLLGFLFP ISRLISYSVF 0301: EKEQKIREGL YMMGLKDEIF HLSWFITYAL QFALCSGIIT ACTMGSLFKY SDKTLVFTYF FLFGLSAIML SFMISTFFTR AKTAVAVGTL TFLGAFFPYY 0401: TVNDESVSMV LKVVASLLSP TAFALGSINF ADYERAHVGL RWSNIWRASS GVSFFVCLLM MLLDSILYCA LGLYLDKVLP RENGVRYPWN FIFSKYFGRK 0501: KNNLQNRIPG FETDMFPADI EVNQGEPFDP VFESISLEMR QQELDGRCIQ VRNLHKVYAS RRGNCCAVNS LQLTLYENQI LSLLGHNGAG KSTTISMLVG 0601: LLPPTSGDAL ILGNSIITNM DEIRKELGVC PQHDILFPEL TVREHLEMFA VLKGVEEGSL KSTVVDMAEE VGLSDKINTL VRALSGGMKR KLSLGIALIG 0701: NSKVIILDEP TSGMDPYSMR LTWQLIKKIK KGRIILLTTH SMDEAEELGD RIGIMANGSL KCCGSSIFLK HHYGVGYTLT LVKTSPTVSV AAHIVHRHIP 0801: SATCVSEVGN EISFKLPLAS LPCFENMFRE IESCMKNSVD RSKISEIEDS DYPGIQSYGI SVTTLEEVFL RVAGCNLDIE DKQEDIFVSP DTKSSLVCIG 0901: SNQKSSMQPK LLASCNDGAG VIITSVAKAF RLIVAAVWTL IGFISIQCCG CSIISRSMFW RHCKALFIKR ARSACRDRKT VAFQFIIPAV FLLFGLLFLQ 1001: LKPHPDQKSI TLTTAYFNPL LSGKGGGGPI PFDLSVPIAK EVAQYIEGGW IQPLRNTSYK FPNPKEALAD AIDAAGPTLG PTLLSMSEFL MSSFDQSYQS 1101: RYGSILMDGQ HPDGSLGYTV LHNGTCQHAG PIYINVMHAA ILRLATGNKN MTIQTRNHPL PPTKTQRIQR HDLDAFSAAI IVNIAFSFIP ASFAVPIVKE 1201: REVKAKHQQL ISGVSVLSYW LSTYVWDFIS FLFPSTFAII LFYAFGLEQF IGIGRFLPTV LMLLEYGLAI ASSTYCLTFF FTEHSMAQNV ILMVHFFSGL 1301: ILMVISFVMG LIPATASANS YLKNFFRLSP GFCFSDGLAS LALLRQGMKD KSSHGVFEWN VTGASICYLG LESIFYFLVT LGLELMPVQK VMSFSIGEWW 1401: QNLKAFKQGA GSSSTEPLLK DSTGAISTDM EDDIDVQEER DRVISGLSDN TMLYLQNLRK VYPGDKHHGP KVAVQSLTFS VQAGECFGFL GTNGAGKTTT 1501: LSMLSGEETP TSGTAFIFGK DIVASPKAIR QHIGYCPQFD ALFEYLTVKE HLELYARIKG VVDHRIDNVV TEKLVEFDLL KHSHKPSFTL SGGNKRKLSV 1601: AIAMIGDPPI VILDEPSTGM DPVAKRFMWD VISRLSTRSG KTAVILTTHS MNEAQALCTR IGIMVGGRLR CIGSPQHLKT RYGNHLELEV KPNEVSNVEL 1701: ENFCQIIQQW LFNVPTQPRS LLGDLEVCIG VSDSITPDTA SASEISLSPE MVQRIAKFLG NEQRVSTLVP PLPEEDVRFD DQLSEQLFRD GGIPLPIFAE 1801: WWLTKEKFSA LDSFIQSSFP GATFKSCNGL SIKYQLPFGE GGLSLADAFG HLERNRNRLG IAEYSISQST LETIFNHFAA NS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)