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AT2G41680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NADPH-dependent thioredoxin reductase C
Curator
Summary (TAIR10)
Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.
Computational
Description (TAIR10)
NADPH-dependent thioredoxin reductase C (NTRC); FUNCTIONS IN: thioredoxin-disulfide reductase activity; INVOLVED IN: hydrogen peroxide catabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Thioredoxin fold (InterPro:IPR012335), Thioredoxin reductase (InterPro:IPR005982), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Pyridine nucleotide-disulphide oxidoreductase, class-II, active site (InterPro:IPR008255), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: NADPH-dependent thioredoxin reductase A (TAIR:AT2G17420.1); Has 36111 Blast hits to 36072 proteins in 3191 species: Archae - 926; Bacteria - 24476; Metazoa - 1051; Fungi - 742; Plants - 985; Viruses - 7; Other Eukaryotes - 7924 (source: NCBI BLink).
Protein Annotations
BioGrid:4103EC:1.8.1.9eggNOG:COG0492eggNOG:COG0526eggNOG:KOG0404eggNOG:KOG0907EMBL:AC002510
EMBL:AK229969EMBL:AY056394EMBL:BT000516EMBL:CP002685EnsemblPlants:AT2G41680EnsemblPlants:AT2G41680.1entrez:818766
Gene3D:3.40.30.10Gene3D:3.50.50.60GeneID:818766Genevisible:O22229GO:GO:0004791GO:GO:0008047GO:GO:0009507
GO:GO:0009570GO:GO:0010380GO:GO:0010581GO:GO:0016671GO:GO:0019430GO:GO:0042744GO:GO:0043085
GO:GO:0045454Gramene:AT2G41680.1hmmpanther:PTHR22912hmmpanther:PTHR22912:SF48HOGENOM:HOG000072912InParanoid:O22229IntAct:O22229
InterPro:IPR000103InterPro:IPR005982InterPro:IPR008255InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937InterPro:IPR023753
KEGG:00240+1.8.1.9KEGG:00450+1.8.1.9KEGG:ath:AT2G41680KO:K00384OMA:WSKGISAPaxDb:O22229Pfam:O22229
Pfam:PF00085Pfam:PF07992Pfscan:PS51352PhylomeDB:O22229PIR:T00824PRIDE:O22229PRINTS:PR00469
PRO:PR:O22229PROSITE:PS00194PROSITE:PS00573PROSITE:PS51352ProteinModelPortal:O22229Proteomes:UP000006548RefSeq:NP_565954.1
scanprosite:PS00194scanprosite:PS00573SMR:O22229STRING:3702.AT2G41680.1SUPFAM:SSF51905SUPFAM:SSF52833TAIR:AT2G41680
tair10-symbols:NTRCTIGRfam:TIGR01292TIGRFAMs:TIGR01292UniGene:At.12409UniGene:At.42799UniProt:O22229
Coordinates (TAIR10) chr2:-:17376349..17379028
Molecular Weight (calculated) 57952.80 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.31
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)