AT2G41630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription factor IIB | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes the transcription factor TFIIB. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
transcription factor IIB (TFIIB); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G10330.1); Has 1967 Blast hits to 1965 proteins in 361 species: Archae - 538; Bacteria - 1; Metazoa - 305; Fungi - 294; Plants - 195; Viruses - 14; Other Eukaryotes - 620 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17355555..17357400 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34273.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 312 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDAYCTDCK KETELVVDHS AGDTLCSECG LVLESHSIDE TSEWRTFANE SSNSDPNRVG GPTNPLLADS ALTTVIAKPN GSSGDFLSSS LGRWQNRNSN 101: SDRGLIQAFK TIATMSERLG LVATIKDRAN ELYKRLEDQK SSRGRNQDAL YAACLYIACR QEDKPRTIKE ICVIANGATK KEIGRAKDYI VKTLGLEPGQ 201: SVDLGTIHAG DFMRRFCSNL AMSNHAVKAA QEAVQKSEEF DIRRSPISIA AVVIYIITQL SDDKKTLKDI SHATGVAEGT IRNSYKDLYP HLSKIAPSWY 301: AKEEDLKNLS SP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)