AT2G41550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rho termination factor | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rho termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 1046 Blast hits to 715 proteins in 227 species: Archae - 8; Bacteria - 305; Metazoa - 330; Fungi - 184; Plants - 18; Viruses - 2; Other Eukaryotes - 199 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17329086..17330830 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 52701.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.59 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDDDDLWGP PRVFVVVQDD TFRKQTVRRC EFWFDFRTDV LEENFQNEKY CELVWRILTE KKRQVTEIAE LERVSVSVSA QNDTASSGSG GDLHEIDSSD 101: SDKTLSTTLP DSDTSSAKLA LDDDENTSSI SDAQTAQTVQ IRDSSNDDTE DIEPETRLMP HETAANDPLT VEVAEDADTS SSPVLESKID EAEEHSCSSL 201: VTDQVFDPIK QALENKSSSA ISRESIGGST LRPLHLETRE KANTTDEDGD ILKDHQQNDS LQDIVTVSEP FTTESLLEMC DEPDKGRDIP CGERSKKSHP 301: EAVVKTVVKD ELIISLLTEA RKKAESKNPG SVLIKKRQRQ SNSSDNKGAN TSFIRNIKQK VQGGAGEINI DPVKNSTQST PKIIRGSSVP TQHADSLLDS 401: SMDGKIQRGG KNVSGSLISL SISELKKKTG KELRSIAKDL KVQHYYKLKK EDLLQRITNQ LNPQLADCTK QRMES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)