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AT2G41430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dehydration-induced protein (ERD15)
Curator
Summary (TAIR10)
Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.
Computational
Description (TAIR10)
EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2); Has 169 Blast hits to 169 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:4078eggNOG:ENOG410J0BBeggNOG:ENOG410Z9ABEMBL:AC004625EMBL:AC005662EMBL:AF372909EMBL:AK317136
EMBL:AY056399EMBL:AY065120EMBL:AY081636EMBL:AY087077EMBL:BT002663EMBL:BX820705EMBL:CP002685
EMBL:D30719EnsemblPlants:AT2G41430EnsemblPlants:AT2G41430.1EnsemblPlants:AT2G41430.2EnsemblPlants:AT2G41430.4EnsemblPlants:AT2G41430.5entrez:818741
GeneID:818741Genevisible:Q39096GO:GO:0005737GO:GO:0009414GO:GO:0009617GO:GO:0009644hmmpanther:PTHR33790
hmmpanther:PTHR33790:SF1HOGENOM:HOG000241366InParanoid:Q39096IntAct:Q39096KEGG:ath:AT2G41430OMA:REKPRNAPaxDb:Q39096
Pfam:Q39096PhylomeDB:Q39096PIR:T02438PRIDE:Q39096PRO:PR:Q39096ProteinModelPortal:Q39096Proteomes:UP000006548
RefSeq:NP_001189727.1RefSeq:NP_181674.1RefSeq:NP_850350.1RefSeq:NP_973657.1RefSeq:NP_973658.1STRING:3702.AT2G41430.1TAIR:AT2G41430
tair10-symbols:CID1tair10-symbols:ERD15tair10-symbols:LSR1UniGene:At.23985UniGene:At.24137UniGene:At.24253UniGene:At.69477
UniGene:At.73065UniProt:Q39096
Coordinates (TAIR10) chr2:+:17269736..17270314
Molecular Weight (calculated) 18412.00 Da
IEP (calculated) 4.28
GRAVY (calculated) -0.81
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMVSGRRST LNPDAPLFIP AAVRQVEDFS PEWWQLVTTS TWYPDYWISQ QQQGADGFYD NGENENGGGH IDVADLLPES FDFDDMEDFF DTDAAEFDQG
101: FDGRMYYQAP SEFGFGKNGE MVKKSSGNRS PRSIVEPAKY AEKPAKWGNQ RVAAAPRNIH QPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)