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AT2G41180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.971
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: sigma factor binding protein 1 (TAIR:AT3G56710.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:4054eggNOG:ENOG410J6K9eggNOG:ENOG410ZFI0EMBL:AC004261EMBL:AY057686EMBL:AY099785EMBL:BT000291
EMBL:CP002685EnsemblPlants:AT2G41180EnsemblPlants:AT2G41180.1entrez:818717GeneID:818717Genevisible:O80669GO:GO:0005634
GO:GO:0009507GO:GO:0051091Gramene:AT2G41180.1hmmpanther:PTHR33624hmmpanther:PTHR33624:SF2HOGENOM:HOG000115137InParanoid:O80669
InterPro:IPR008889KEGG:ath:AT2G41180OMA:CPSKFREPaxDb:O80669Pfam:O80669Pfam:PF05678PhylomeDB:O80669
PIR:T02101PRO:PR:O80669Proteomes:UP000006548RefSeq:NP_030663.1STRING:3702.AT2G41180.1TAIR:AT2G41180UniGene:At.12552
UniGene:At.66337UniProt:O80669
Coordinates (TAIR10) chr2:+:17165242..17165667
Molecular Weight (calculated) 15570.30 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.58
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQSSSTLLI NQRKSSSSPT RIPPKQKRKS TTTHKPIKVR YISNPMRVET CPSKFRELVQ ELTGQDAADL PPSPTTFTAV DLHRPCESEM NLEPLDGEVR
101: GEYYSPLDEE VFNAPQMSAG LSGFFSSGFY NVNALGSIGS L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)