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AT2G41120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF309 (InterPro:IPR005500); Has 349 Blast hits to 349 proteins in 112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1547eggNOG:ENOG410IW90EMBL:AC004261EMBL:BT010759EMBL:BT010981EMBL:CP002685EnsemblPlants:AT2G41120
EnsemblPlants:AT2G41120.1entrez:818711Gene3D:1.10.3450.10GeneID:818711Gramene:AT2G41120.1hmmpanther:PTHR34796hmmpanther:PTHR34796:SF1
HOGENOM:HOG000006087IntAct:O80675InterPro:IPR005500InterPro:IPR023203KEGG:ath:AT2G41120OMA:ELAACSEPfam:PF03745
PhylomeDB:O80675PIR:T02107Proteomes:UP000006548RefSeq:NP_181645.1SMR:O80675STRING:3702.AT2G41120.1SUPFAM:SSF140663
TAIR:AT2G41120UniGene:At.48576UniGene:At.69620UniProt:O80675
Coordinates (TAIR10) chr2:-:17141454..17142419
Molecular Weight (calculated) 29533.40 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.38
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)