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AT2G41110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calmodulin 2
Curator
Summary (TAIR10)
Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.
Computational
Description (TAIR10)
calmodulin 2 (CAM2); FUNCTIONS IN: protein binding, calcium ion binding; INVOLVED IN: pollen germination, protein catabolic process; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 34068 Blast hits to 23201 proteins in 1763 species: Archae - 4; Bacteria - 227; Metazoa - 14490; Fungi - 7344; Plants - 6998; Viruses - 0; Other Eukaryotes - 5005 (source: NCBI BLink).
Protein Annotations
BioGrid:10163BioGrid:2597BioGrid:4047eggNOG:COG5126eggNOG:KOG0027EMBL:AL390921EMBL:AY046048
EMBL:AY057567EMBL:AY085660EMBL:AY091301EMBL:CP002686EMBL:M73711EMBL:M73712EnsemblPlants:AT2G27030.1
EnsemblPlants:AT2G41110EnsemblPlants:AT2G41110.1EnsemblPlants:AT3G56800.1entrez:817245entrez:818710entrez:824847ExpressionAtlas:P0DH98
Gene3D:1.10.238.10GeneID:817245GeneID:818710GeneID:824847Genevisible:P0DH98GO:GO:0005509GO:GO:0005737
GO:GO:0005773GO:GO:0019722Gramene:AT2G27030.1Gramene:AT2G41110.1Gramene:AT3G56800.1hmmpanther:PTHR23050hmmpanther:PTHR23050:SF166
InParanoid:P0DH98InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT2G27030KEGG:ath:AT3G56800KO:K02183
PaxDb:P0DH98Pfam:P0DH97Pfam:P0DH98Pfam:PF13499Pfam:Q682T9Pfscan:PS50222PhylomeDB:P0DH98
PIR:S22503PRIDE:P0DH98PRO:PR:P0DH98ProMEX:P0DH98PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:P0DH98
Proteomes:UP000006548RefSeq:NP_180271.1RefSeq:NP_191239.1RefSeq:NP_850344.1scanprosite:PS00018SMART:SM00054SMR:P0DH98
STRING:3702.AT2G27030.3SUPFAM:SSF47473TAIR:AT3G56800tair10-symbols:ATCAL5tair10-symbols:CAM2UniGene:At.23067UniGene:At.23711
UniGene:At.48576UniGene:At.67188UniGene:At.67742UniGene:At.69620UniProt:P0DH97UniProt:P0DH98UniProt:Q682T9
Coordinates (TAIR10) chr2:+:17140379..17141192
Molecular Weight (calculated) 16820.60 Da
IEP (calculated) 3.88
GRAVY (calculated) -0.62
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)