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AT2G41100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.834
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22215637 (2012): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF hand family protein
Curator
Summary (TAIR10)
encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.
Computational
Description (TAIR10)
TOUCH 3 (TCH3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to mechanical stimulus, response to temperature stimulus, thigmotropism, response to absence of light; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 47548 Blast hits to 19426 proteins in 1680 species: Archae - 4; Bacteria - 353; Metazoa - 18604; Fungi - 12275; Plants - 9433; Viruses - 2; Other Eukaryotes - 6877 (source: NCBI BLink).
Protein Annotations
BioGrid:4046DNASU:818709eggNOG:COG5126eggNOG:KOG0027EMBL:AC004261EMBL:AF424577EMBL:AY120719
EMBL:BT000036EMBL:CP002685EMBL:D45848EMBL:L34546EnsemblPlants:AT2G41100EnsemblPlants:AT2G41100.1EnsemblPlants:AT2G41100.4
entrez:818709ExpressionAtlas:P25071Gene3D:1.10.238.10GeneID:818709Genevisible:P25071GO:GO:0005509GO:GO:0005774
GO:GO:0009506GO:GO:0009612GO:GO:0009646GO:GO:0009652hmmpanther:PTHR23050hmmpanther:PTHR23050:SF176HOGENOM:HOG000233018
InParanoid:P25071IntAct:P25071InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247OMA:QITEYREPaxDb:P25071
Pfam:P25071Pfam:PF13499Pfscan:PS50222PhylomeDB:P25071PIR:B34669PIR:T02109PRIDE:P25071
PRO:PR:P25071PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:P25071Proteomes:UP000006548RefSeq:NP_001189723.1RefSeq:NP_181643.1
scanprosite:PS00018SMART:SM00054SMR:P25071STRING:3702.AT2G41100.1SUPFAM:SSF47473TAIR:AT2G41100tair10-symbols:ATCAL4
tair10-symbols:TCH3UniGene:At.12547UniGene:At.269UniProt:P25071
Coordinates (TAIR10) chr2:+:17138131..17139406
Molecular Weight (calculated) 36809.30 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.76
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKLTDDQI TEYRESFRLF DKNGDGSITK KELGTMMRSI GEKPTKADLQ DLMNEADLDG DGTIDFPEFL CVMAKNQGHD QAPRHTKKTM ADKLTDDQIT
101: EYRESFRLFD KNGDGSITKK ELRTVMFSLG KNRTKADLQD MMNEVDLDGD GTIDFPEFLY LMAKNQGHDQ APRHTKKTMV DYQLTDDQIL EFREAFRVFD
201: KNGDGYITVN ELRTTMRSLG ETQTKAELQD MINEADADGD GTISFSEFVC VMTGKMIDTQ SKKETYRVVN QGQGQVQRHT RNDRAGGTNW ERDIAVGVAS
301: NIIASPISDF MKDRFKDLFE ALLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)