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AT2G41090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 24843 Blast hits to 18222 proteins in 1715 species: Archae - 1; Bacteria - 127; Metazoa - 10608; Fungi - 5338; Plants - 5376; Viruses - 2; Other Eukaryotes - 3391 (source: NCBI BLink).
Protein Annotations
BioGrid:4045eggNOG:COG5126eggNOG:KOG0027EMBL:AC004261EMBL:AY046044EMBL:AY084987EMBL:CP002685
EMBL:Z12136EnsemblPlants:AT2G41090EnsemblPlants:AT2G41090.1entrez:818708Gene3D:1.10.238.10GeneID:818708Genevisible:P30187
GO:GO:0005509GO:GO:0005737GO:GO:0034599GO:GO:2000082Gramene:AT2G41090.1hmmpanther:PTHR23050HOGENOM:HOG000233018
InParanoid:P30187IntAct:P30187InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT2G41090KO:K02183
PaxDb:P30187Pfam:P30187Pfam:PF13499Pfscan:PS50222PhylomeDB:P30187PIR:S35188PRIDE:P30187
PRO:PR:P30187PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:P30187Proteomes:UP000006548RefSeq:NP_181642.1scanprosite:PS00018
SMART:SM00054SMR:P30187STRING:3702.AT2G41090.1SUPFAM:SSF47473TAIR:AT2G41090UniGene:At.12547UniProt:P30187
Coordinates (TAIR10) chr2:+:17135823..17136618
Molecular Weight (calculated) 21728.50 Da
IEP (calculated) 4.36
GRAVY (calculated) -0.53
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MANKFTRQQI SEFREQFSVY DKNGDGHITT EEFGAVMRSL GLNLTQAELQ EEINDSDLDG DGTINFTEFL CAMAKDTYSE KDLKKDFRLF DIDKNGFISA
101: AEMRYVRTIL RWKQTDEEID EIIKAADVDG DGQINYREFA RLMMAKNQGH DTKYDTTGGT LERDLAAGVA KNIIAAPMTD FIKNLFEALF S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)