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AT2G41060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UBP1-associated protein 2A (TAIR:AT3G56860.5); Has 20258 Blast hits to 14290 proteins in 711 species: Archae - 0; Bacteria - 976; Metazoa - 9998; Fungi - 2289; Plants - 4483; Viruses - 115; Other Eukaryotes - 2397 (source: NCBI BLink).
Protein Annotations
BioGrid:4042eggNOG:COG0724eggNOG:KOG0118EMBL:AC004261
EMBL:AF439844EMBL:AK227158EMBL:AY133583EMBL:CP002685
EnsemblPlants:AT2G41060EnsemblPlants:AT2G41060.1EnsemblPlants:AT2G41060.2entrez:818705
Gene3D:3.30.70.330GeneID:818705Genevisible:O80678GO:GO:0000166
GO:GO:0003723GO:GO:0005634GO:GO:0006952GO:GO:0008219
GO:GO:0009693GO:GO:0010150Gramene:AT2G41060.1Gramene:AT2G41060.2
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF490HOGENOM:HOG000070822InParanoid:O80678
IntAct:O80678InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT2G41060
KO:K12741OMA:EAKGEDNPaxDb:O80678Pfam:O80678
Pfam:PF00076Pfscan:PS50102PhylomeDB:O80678PIR:T02113
PRIDE:O80678PRO:PR:O80678PROSITE:PS50102ProteinModelPortal:O80678
Proteomes:UP000006548RefSeq:NP_001078035.1RefSeq:NP_181639.1SMART:SM00360
SMR:O80678STRING:3702.AT2G41060.1SUPFAM:SSF54928TAIR:AT2G41060
UniGene:At.65764UniProt:O80678
Coordinates (TAIR10) chr2:+:17127138..17128493
Molecular Weight (calculated) 49028.80 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.82
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)