AT2G41050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.977 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PQ-loop repeat family protein / transmembrane family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT4G36850.1); Has 930 Blast hits to 673 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 545; Plants - 89; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17123388..17125622 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41808.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||
| Length | 376 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLHSSFRDG LSLSLGIISV ISWGVAEIPQ IMTNYSEKST EGLSITFLTT WMIGDIFNLL GCLMEPATLP TQFYMALLYT VTTSVLYVQS IYYGHIYPRL 101: KNRRDQMVEA ERISNIISDV KIPGRWRNSS DTTTCGGQTT PITMIPGSQR TSFTGRELFY TSARSLSSSH TPPAGSVLAQ RMARGYSEPT LEEPLLPEDV 201: THPSTKSLLC VVSVFLFLGT FNLPNLLSES RTMALGEGDR VFVVRAARKL LQVTSSNVAE HSGGESSRIG MFLGWAMAAI YMGGRLPQIC LNMRRGHVEG 301: LNPLMFFFAL VGNMTYVASI LVNSVEWLKL APNLPWLVDA GGCVVLDFLI LLQFFHFRCR KDKDTDKKKH ETAEAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)