AT2G40990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.693 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DHHC-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G56920.1); Has 5135 Blast hits to 5125 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 2229; Fungi - 738; Plants - 856; Viruses - 0; Other Eukaryotes - 1312 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17105097..17106773 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46995.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.91 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 411 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRKKSCHVH NAPSDDDIMF SQDHKPKRIY QLWPGNNRFY CGGRLVFGPD ASSLLLTTAM IGGPALTFCI RMVFLIGKRY PLFHSLILLG ALLLTVLDFT 101: FLFLTSSRDP GIIPRNKEAP EAEGLDMITQ SSEWVNNKLG NTKIPRTKDI LVNGYTVKVK FCDTCLLYRP PRASHCSICN NCVQRFDHHC PWVGQCIALR 201: NYPYFICFIS TSTLLCLYVF VFSWVSMLEV HGKMLLMVIT NDLVFVVLIL YCFVVVWFVG GLTVFHLYLI CTNQTTYENF RYRYDKKENP YGKGLFKNLY 301: ELFFARIPPP MINFRDWAPE EPDEEVGSIA SELDRTFGPR GDKYDMEMEI GGCKNSKVGL QLHTLEYDNN NSSEETVKKK GVSEETAAFY IPGIQEPANI 401: TRNSSIDVRS R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)