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AT2G40970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MYBC1; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10760.1); Has 1641 Blast hits to 1639 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1614; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU52eggNOG:ENOG411077AEMBL:AC002409EMBL:AC004261EMBL:AY072381EMBL:BT000098EMBL:CP002685
EnsemblPlants:AT2G40970EnsemblPlants:AT2G40970.1entrez:818697Gene3D:1.10.10.60GeneID:818697GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009409Gramene:AT2G40970.1hmmpanther:PTHR31442hmmpanther:PTHR31442:SF1
HOGENOM:HOG000238691InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT2G40970OMA:LRYEDSE
Pfam:PF00249Pfscan:PS51294PhylomeDB:O22210PIR:T00761PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_181630.1
SMR:O22210STRING:3702.AT2G40970.1SUPFAM:SSF46689TAIR:AT2G40970tair10-symbols:MYBC1TIGRfam:TIGR01557TIGRFAMs:TIGR01557
UniGene:At.27776UniProt:O22210
Coordinates (TAIR10) chr2:-:17097772..17098518
Molecular Weight (calculated) 27556.10 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.48
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MREDNPNWFL RWEEELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK RTTAIYHQKL QSSTTPTTPT PTPPPMMMNS DFGGGDSTDL GSGSIGGEPA
101: RTLKRPRLVW TPQLHKRFVD AVGHLGIKNA VPKTIMQLMS VEGLTRENVA SHLQKYRLYL RRMQGGNGNG ITGGHVIVSD SATDRLFASS PVPAHFLSPD
201: YLMPPLEHSY MGKHVITQQN QVVRNLRYED SEYGHGSMKM LKLFPAGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)