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AT2G40900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT3G56620.1); Has 4454 Blast hits to 4441 proteins in 784 species: Archae - 39; Bacteria - 2478; Metazoa - 2; Fungi - 0; Plants - 1222; Viruses - 0; Other Eukaryotes - 713 (source: NCBI BLink).
Protein Annotations
BioGrid:4024eggNOG:ENOG410JVNReggNOG:ENOG41105RDEMBL:AC002409EMBL:AK226262EMBL:CP002685EnsemblPlants:AT2G40900
EnsemblPlants:AT2G40900.1entrez:818687GeneID:818687Genevisible:F4IJ08GO:GO:0005886GO:GO:0006810GO:GO:0006868
GO:GO:0015186GO:GO:0016021GO:GO:0022857GO:GO:0044746GO:GO:0048316Gramene:AT2G40900.1hmmpanther:PTHR31218
hmmpanther:PTHR31218:SF9HOGENOM:HOG000237441InParanoid:F4IJ08InterPro:IPR000620InterPro:IPR030184KEGG:ath:AT2G40900OMA:FFRSHLT
PANTHER:PTHR31218PaxDb:F4IJ08Pfam:F4IJ08Pfam:PF00892PIR:T00754PRIDE:F4IJ08PRO:PR:F4IJ08
ProteinModelPortal:F4IJ08Proteomes:UP000006548RefSeq:NP_181622.2SUPFAM:0043518TAIR:AT2G40900TMHMM:TMhelixUniGene:At.42898
UniProt:F4IJ08
Coordinates (TAIR10) chr2:-:17063396..17065514
Molecular Weight (calculated) 43051.40 Da
IEP (calculated) 8.54
GRAVY (calculated) 0.58
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLRMSESAK PYFAMVCLQF GYAGMNLVTK TVLDRGMSHY VLVAYRNAFA TAAIAPFALL SERKVRSKMT FPIFMRIFLL ALLGPVIDQN LYYIGLKLTS
101: PTFSSAVSNI VPAITIILAT LFRMEKVEMR KVRCLVKVMG TLVTVVGSIL MIFYKGPFIN FFRSHLTAAS SPPTADYLKA AVFLLLASLS WASFFVLQAA
201: TLKKYSAHLS MSTMVCFMGT LQSLALAFVM EHNPSALNIG FDMNLLASAY AGIMSSSIAY YVQGLMMQRK GPVFVTAFNP LIVVIVSIMS FFVLGQGIYL
301: GGVIGVVVLM VGVYAVLWGK HVDDDGEETR HEDNVVAVKC CSGNNGLTIM PKIDEADEED VETGKATSEK ESSVPEVVVV VFCSENVHSV SRPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)