AT2G40815.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.549 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); Has 2829 Blast hits to 2399 proteins in 295 species: Archae - 0; Bacteria - 112; Metazoa - 998; Fungi - 464; Plants - 875; Viruses - 39; Other Eukaryotes - 341 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17034736..17036110 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39680.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKILVEICM ISARGLRVGI GIGSSLLKHQ WYAVGWLDPE DKYCTTIDAS RADNPVWRTK FATLLDDSTI QDSKLALQVE VYSREPLFLR KRLHGSATVS 101: LKEFLTKYKQ QQSSSKAVIE ETGSYQLRKT NSSKPQGFVD VSIRISAERE DFGGFTGDFG GVMLSNNSDY NTSGQDYMAG SSQYPFAPMD QSNPFSVPPS 201: YNHHSSMPNP PMTNTNPQMQ QPYYPPPMQP PPPPMNSGYM PTYIPKSVND SSMPNPPMNN TNPQMQQPYY PPPMQPAPPP MNSGYMPTYI PNSENVTNIP 301: SSSSSGGVPG GAGRGYARTG PGFAVGVGAG AVVGAGAALY GSEFMSGIDL PSSLPHPSVP ISIDPPF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)