AT2G40770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17013535..17021315 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 188083.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1664 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGRRKQSKPQ RAVGLITPTG SESDRNQLPG DEAEGSGDKN VEDIDKPYYV NICLSSRVSE QQQNFDLAEV VLTNFSVRER VGSSSTFTKP IEVDHDLDCS 0101: LRFRLCNVTN FVDRIKLGHW PVLSSSDITL ELVDNKVSDD EVGSVIWSAS FDGPGEGVSG LAHLASIKFL TLRLMPGNEG LLSPRVRVEM LQQAFDACDS 0201: LLENTRQIWK KSMIHVMSWL RPEVMTSEAR YGTRFNVKDI ESSVVTEDET LDSSKQSSFD AAAFYEAIKP SKTDAMLGDD IADLLPELRP YQRRAAYWMV 0301: QRERGDPITL GDKEDNQFIS PLSISVGFLD SATKMFLNPF SGNISLTPEY FSPRIQGGIL ADEMGLGKTV ELLACIFSHR KPAEDEISVS NGSSVTDVLN 0401: AGLRRLKRER VECICGAVSE SHKYKGVWVQ CDLCDAWQHA DCVGYSPKGK GKKDSQHIDE KASQKKSKKD ATEIIVREGE YICQMCSELL QVTASPISTG 0501: ATLIVCPAPI LPQWHSEITR HTRLGSLITC IYEGVRNASL SEEPMIDITE LLNADIVLTT YDVLKEDLTH DFDRHDGDRH CLRFQKRYPV IPTPLTRIFW 0601: WRICLDEAQM VESNAAAATE MALRLYTKHR WCITGTPIQR KLDDLFGLLK FLKANPFDVS RWWIEVIRDP YERRDTKAME FTHKFFKQVM WRSSKVHVAD 0701: ELQLPPQEEC VSWLKFSAIE EHFYSRQHDT CVSYAREVIE TLKRDILKRG HTSSDNPLVT HAEAAKLLNS LLKLRQACCH PQVGSSGLRS LQQSPMTMEE 0801: ILMVLVKKTQ SEGEEALRVL IVALNGIAAI AMLKQEFSEA VSLYKEALSI TEEHAEDFRL DPLLNIHILH NLAEILPMAK SYGGKLSASG RPETKIDVKD 0901: DDHHRASKRQ RINELESLTH DSSETVHQRE AIAPDNGLKK DGECHEECKT LDIVCDTLKV KYLSAFNSKL SAAQHEFKKS YNQVSESLSN MGKQRSVWWL 1001: DALQLTEQNK DFSSELTRKI EEALHGNLNN SSSSRESSRF RTIHGMKLHL QTCMDMLERS RKKVIDRILE IDQTMEKPKL EDIERISNCK YCNKNSDGPP 1101: CIHCELDELF QEYEARLFRL NKSRRGVMEI AAAEETVHLQ KKRDARNLFL FGLSSRSKDL NASRGDDEEP TKRNAGDIVV LSKSPSETEI VLGVIRNHCK 1201: THLDRESKLA ATKHLHTLEV MRKEYVHARV LARDQAQLLR AYDEINMSTM RLQLRESEDD TSIYALGRDE LDVASVLNTN DKFMAQSSLL SIKGKLRYLK 1301: GLMKSKQKQE SESPDLSSPI HETVDASDPA EQESENLLKR DEACPICHEI LRNQKMVFQC GHSTCCNCFF AMTERKSVQE TLQKWVMCPI CRQHTDVRNI 1401: AYADDRRNSS SSDQDHKDSE ASLVVQGSYG TKIEAVTRRI LWIKSSDPQT KVLVFSSWND VLDVLEHAFA ANSITCIRMK GGRKSQTAIS KFKGSEKETQ 1501: KTNSHQKEEK SIQVLLLLVQ HGANGLNLLE AQHVILVEPL LNPAAEAQAV GRVHRIGQEK PTLVHRFLVS GTVEESIYKL NRNKNTNLSS FSSRNTKNQD 1601: QQFLTLKDLE SLFASPTAET AEMEQNPGER QENLRDLPPS VAAALAAERR MKESNASSST TNAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)